# 2020/04/30 18:23:35
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR241939	Replication ID
# SRP000540	Sample ID
# ERR241939_1.filt	Read1
# ERR241939_2.filt	Read2
R1	        2148581 (100.0000%)	[A] Total raw reads
R1	        2110206 (98.2139%)	[B] Total reads after QC of (A)
R1		
R1	        2110206 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        3915346 (92.7717%)	[B-3] Total mapped reads of (B-2)x2
R1	         305066 (7.2283%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1968820 (93.2999%)	[F] Total mapped reads of (B-2)
R1	         141386 (6.7001%)	[G] Total unmapped reads of (B-2)
R1	          15248 (0.7226%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        2094958 (99.2774%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           1665 (0.0789%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	       794.765	[I-3] RPMH of (I-1)
R1	       789.023	[I-4] PPM of (I-1)
R1	    109194.648	[I-5] RPMU of (I-1)
R1	              1 (0.0000%)	[I-6] Total chimeric reads of (I-1)
R1	         0.477	[I-7] RPMH of (I-6)
R1	         0.474	[I-8] PPM of (I-6)
R1	        65.582	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        2148581 (100.0000%)	[A] Total raw reads
R2	        2110206 (98.2139%)	[B] Total reads after QC of (A)
R2		
R2	        2110206 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        3915346 (92.7717%)	[B-3] Total mapped reads of (B-2)x2
R2	         305066 (7.2283%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1946526 (92.2434%)	[F] Total mapped reads of (B-2)
R2	         163680 (7.7566%)	[G] Total unmapped reads of (B-2)
R2	          23797 (1.1277%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        2086409 (98.8723%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           1649 (0.0781%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       790.353	[I-3] RPMH of (I-1)
R2	       781.440	[I-4] PPM of (I-1)
R2	     69294.449	[I-5] RPMU of (I-1)
R2	              3 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R2	         1.438	[I-7] RPMH of (I-6)
R2	         1.422	[I-8] PPM of (I-6)
R2	       126.066	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
792.3787	786.6531	108866.7366	1660	0	1660	1660.000	165508	ALL_R1	viral	Lymphocryptovirus	0.0
<<
788.9153	780.0186	69168.3826	1646	0	1646	1646.000	164158	ALL_R2	viral	Lymphocryptovirus	0.0
<<
0.4773	0.4739	65.5824	1	0	1	1.000	100	R1U	viral	Lymphocryptovirus	n/a	
<<
1.4379	1.4217	126.0663	3	0	3	3.000	297	R2U	viral	Lymphocryptovirus	n/a