# 2020/04/29 22:47:35
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR241828	Replication ID
# SRP000540	Sample ID
# ERR241828_1.filt	Read1
# ERR241828_2.filt	Read2
R1	        2024991 (100.0000%)	[A] Total raw reads
R1	        1987611 (98.1541%)	[B] Total reads after QC of (A)
R1		
R1	        1987611 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        3679662 (92.5649%)	[B-3] Total mapped reads of (B-2)x2
R1	         295560 (7.4351%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1850315 (93.0924%)	[F] Total mapped reads of (B-2)
R1	         137296 (6.9076%)	[G] Total unmapped reads of (B-2)
R1	          15827 (0.7963%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        1971784 (99.2037%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           2456 (0.1236%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      1245.573	[I-3] RPMH of (I-1)
R1	      1235.654	[I-4] PPM of (I-1)
R1	    155177.861	[I-5] RPMU of (I-1)
R1	              2 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R1	         1.014	[I-7] RPMH of (I-6)
R1	         1.006	[I-8] PPM of (I-6)
R1	       126.366	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        2024991 (100.0000%)	[A] Total raw reads
R2	        1987611 (98.1541%)	[B] Total reads after QC of (A)
R2		
R2	        1987611 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        3679662 (92.5649%)	[B-3] Total mapped reads of (B-2)x2
R2	         295560 (7.4351%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1829347 (92.0375%)	[F] Total mapped reads of (B-2)
R2	         158264 (7.9625%)	[G] Total unmapped reads of (B-2)
R2	          23724 (1.1936%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1963887 (98.8064%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           2378 (0.1196%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      1210.864	[I-3] RPMH of (I-1)
R2	      1196.411	[I-4] PPM of (I-1)
R2	    100236.048	[I-5] RPMU of (I-1)
R2	              1 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R2	         0.509	[I-7] RPMH of (I-6)
R2	         0.503	[I-8] PPM of (I-6)
R2	        42.151	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
1245.0654	1235.1511	155114.6774	2455	0	2455	2455.000	244826	ALL_R1	viral	Lymphocryptovirus	0.0
<<
1210.8640	1196.4112	100236.0479	2378	0	2378	2378.000	237046	ALL_R2	viral	Lymphocryptovirus	0.0
<<
1.0143	1.0062	126.3663	2	0	2	2.000	200	R1U	viral	Lymphocryptovirus	n/a	
<<
0.5092	0.5031	42.1514	1	0	1	1.000	99	R2U	viral	Lymphocryptovirus	n/a