# 2020/04/29 19:18:10
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR240808	Replication ID
# SRP000540	Sample ID
# ERR240808_1.filt	Read1
# ERR240808_2.filt	Read2
R1	        1792081 (100.0000%)	[A] Total raw reads
R1	        1758810 (98.1434%)	[B] Total reads after QC of (A)
R1		
R1	        1758810 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        3250849 (92.4162%)	[B-3] Total mapped reads of (B-2)x2
R1	         266771 (7.5838%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1634352 (92.9237%)	[F] Total mapped reads of (B-2)
R1	         124458 (7.0763%)	[G] Total unmapped reads of (B-2)
R1	          13871 (0.7887%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        1744939 (99.2113%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           2142 (0.1218%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      1227.550	[I-3] RPMH of (I-1)
R1	      1217.869	[I-4] PPM of (I-1)
R1	    154422.897	[I-5] RPMU of (I-1)
R1	              4 (0.0002%)	[I-6] Total chimeric reads of (I-1)
R1	         2.292	[I-7] RPMH of (I-6)
R1	         2.274	[I-8] PPM of (I-6)
R1	       288.371	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        1792081 (100.0000%)	[A] Total raw reads
R2	        1758810 (98.1434%)	[B] Total reads after QC of (A)
R2		
R2	        1758810 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        3250849 (92.4162%)	[B-3] Total mapped reads of (B-2)x2
R2	         266771 (7.5838%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1616497 (91.9086%)	[F] Total mapped reads of (B-2)
R2	         142313 (8.0914%)	[G] Total unmapped reads of (B-2)
R2	          21040 (1.1963%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1737770 (98.8037%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           2119 (0.1205%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      1219.379	[I-3] RPMH of (I-1)
R2	      1204.792	[I-4] PPM of (I-1)
R2	    100712.928	[I-5] RPMU of (I-1)
R2	              2 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R2	         1.151	[I-7] RPMH of (I-6)
R2	         1.137	[I-8] PPM of (I-6)
R2	        95.057	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
1225.8308	1216.1632	154206.6181	2139	0	2139	2139.000	213147	ALL_R1	viral	Lymphocryptovirus	0.0
<<
1217.6525	1203.0862	100570.3422	2116	0	2116	2116.000	210803	ALL_R2	viral	Lymphocryptovirus	0.0
<<
2.2923	2.2743	288.3714	4	0	4	4.000	398	R1U	viral	Lymphocryptovirus	n/a	
<<
0.5755	0.5686	47.5285	1	0	1	1.000	37	R2U	bacteria	Elizabethkingia	n/a	
<<
0.5755	0.5686	47.5285	1	0	1	1.000	100	R2U	viral	Lymphocryptovirus	n/a