# 2018/03/21 04:45:29
# HUMAN	Target (Host) organism
# RNA	Sequencing source
# ENCSR373BDG_1	Replication ID
# ENCSR373BDG	Sample ID
# ENCFF109IUU	Read1
# ENCFF322VHJ	Read2
R1	 106249338 (100.0000%)	[A] Total raw reads
R1	 101950156 (95.9537%)	[B] Total reads after QC of (A)
R1		
R1	 101950156 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	 192347002 (94.3338%)	[B-3] Total mapped reads of (B-2)x2
R1	  11553310 (5.6662%)	[B-4] Total unmapped reads of (B-2)x2
R1	  96217870 (94.3774%)	[F] Total mapped reads of (B-2)
R1	   5732286 (5.6226%)	[G] Total unmapped reads of (B-2)
R1	   2775845 (2.7227%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	  99174311 (97.2773%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	   1432825 (1.4054%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	     14447.542	[I-3] RPMH of (I-1)
R1	     14054.172	[I-4] PPM of (I-1)
R1	       552 (0.0005%)	[I-5] Total chimeric reads of (I-1)
R1	         5.566	[I-7] RPMH of (I-5)
R1	         5.414	[I-8] PPM of (I-5)
R1		
## -----------------------------------------

R2	 106249338 (100.0000%)	[A] Total raw reads
R2	 101950156 (95.9537%)	[B] Total reads after QC of (A)
R2		
R2	 101950156 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	 192347002 (94.3338%)	[B-3] Total mapped reads of (B-2)x2
R2	  11553310 (5.6662%)	[B-4] Total unmapped reads of (B-2)x2
R2	  96129132 (94.2903%)	[F] Total mapped reads of (B-2)
R2	   5821024 (5.7097%)	[G] Total unmapped reads of (B-2)
R2	   2830062 (2.7759%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	  99120094 (97.2241%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	   1435425 (1.4080%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	     14481.675	[I-3] RPMH of (I-1)
R2	     14079.674	[I-4] PPM of (I-1)
R2	       585 (0.0006%)	[I-5] Total chimeric reads of (I-1)
R2	         5.902	[I-7] RPMH of (I-5)
R2	         5.738	[I-8] PPM of (I-5)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMH   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
7451.5073	7248.6216	750184	12249	737935	738998.106	74634131	ALL_R1	bacteria	Bacillus	0.0
1284.1684	1249.2037	608955	596076	12879	127356.515	60519819	ALL_R1	bacteria	Pseudomonas	0.0
580.5439	564.7371	67807	15169	52638	57575.037	6661228	ALL_R1	bacteria	Sphingomonas	0.0
28.8129	28.0284	7629	7091	538	2857.498	752947	ALL_R1	bacteria	Sphingobium	1.57e-04
18.1063	17.6133	6060	4453	1607	1795.681	601599	ALL_R1	bacteria	Bradyrhizobium	0.0
<<
7475.2052	7267.6989	750989	11143	739846	740943.040	74256316	ALL_R2	bacteria	Bacillus	0.0
1210.7674	1177.1574	612373	597429	14944	120011.379	59209890	ALL_R2	bacteria	Pseudomonas	0.0
596.2996	579.7468	66465	12793	53672	59105.277	6400199	ALL_R2	bacteria	Sphingomonas	0.0
19.0705	18.5411	4898	3291	1607	1890.267	469948	ALL_R2	bacteria	Bradyrhizobium	0.0
<<
1007.0861	979.1301	573271	573270	1	99822.466	55407919	ALL_R2	viral	Phix174microvirus	n/a
<<
4.4989	4.3764	454	8	446	446.174	44533	R1U	bacteria	Bacillus	n/a	PCNX2(83);SRSF5(26);SFPQ(26);CYB5R4(25);PNRC2(15)
<<
3.9494	3.8397	416	27	389	391.463	39771	R2U	bacteria	Bacillus	n/a	TENM4(45);KDM3B(41);RNR2(40);LAMB1(33);GBA(27)