# 2018/03/13 20:24:11
# HUMAN	Target (Host) organism
# RNA	Sequencing source
# ENCSR878EUT_2	Replication ID
# ENCSR878EUT	Sample ID
# ENCFF509JLH	Read1
# ENCFF867UER	Read2
R1	 106140353 (100.0000%)	[A] Total raw reads
R1	 102896272 (96.9436%)	[B] Total reads after QC of (A)
R1		
R1	 102896272 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	 197395290 (95.9196%)	[B-3] Total mapped reads of (B-2)x2
R1	   8397254 (4.0804%)	[B-4] Total unmapped reads of (B-2)x2
R1	  98773592 (95.9934%)	[F] Total mapped reads of (B-2)
R1	   4122680 (4.0066%)	[G] Total unmapped reads of (B-2)
R1	    794748 (0.7724%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	 102101524 (99.2276%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	    429006 (0.4169%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      4201.759	[I-3] RPMH of (I-1)
R1	      4169.306	[I-4] PPM of (I-1)
R1	       252 (0.0002%)	[I-5] Total chimeric reads of (I-1)
R1	         2.468	[I-7] RPMH of (I-5)
R1	         2.449	[I-8] PPM of (I-5)
R1		
## -----------------------------------------

R2	 106140353 (100.0000%)	[A] Total raw reads
R2	 102896272 (96.9436%)	[B] Total reads after QC of (A)
R2		
R2	 102896272 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	 197395290 (95.9196%)	[B-3] Total mapped reads of (B-2)x2
R2	   8397254 (4.0804%)	[B-4] Total unmapped reads of (B-2)x2
R2	  98621698 (95.8457%)	[F] Total mapped reads of (B-2)
R2	   4274574 (4.1543%)	[G] Total unmapped reads of (B-2)
R2	    854735 (0.8307%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	 102041537 (99.1693%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	    428505 (0.4164%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      4199.319	[I-3] RPMH of (I-1)
R2	      4164.437	[I-4] PPM of (I-1)
R2	       223 (0.0002%)	[I-5] Total chimeric reads of (I-1)
R2	         2.185	[I-7] RPMH of (I-5)
R2	         2.167	[I-8] PPM of (I-5)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMH   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
1847.6384	1833.3677	193421	5397	188024	188646.698	19180456	ALL_R1	bacteria	Bacillus	0.0
674.5251	669.3152	231748	221548	10200	68870.036	22644031	ALL_R1	bacteria	Pseudomonas	0.0
14.6207	14.5077	5842	5605	237	1492.791	579254	ALL_R1	bacteria	Sphingomonas	7.98e-15
9.0937	9.0235	2275	1703	572	928.484	224766	ALL_R1	bacteria	Cutibacterium	7.23e-225
6.4396	6.3899	2571	2285	286	657.492	254203	ALL_R1	bacteria	Corynebacterium	1.30e-18
<<
1846.8166	1831.4755	193206	5097	188109	188452.003	19281384	ALL_R2	bacteria	Bacillus	0.0
712.6555	706.7356	232205	220227	11978	72720.463	22373071	ALL_R2	bacteria	Pseudomonas	0.0
6.4877	6.4338	2094	1656	438	662.013	206807	ALL_R2	bacteria	Cutibacterium	2.13e-100
4.1979	4.1631	2149	1918	231	428.364	212655	ALL_R2	bacteria	Corynebacterium	9.28e-06
2.7656	2.7426	2770	2573	197	282.204	273713	ALL_R2	bacteria	Acidovorax	5.00e-04
<<
1.1088	1.1003	122	9	113	113.213	11449	R1U	bacteria	Bacillus	n/a	FN1(21);RNR2(14);S100A16(11);RNR1(7);CCNG1(7)
<<
1.4406	1.4286	150	3	147	147.000	13417	R2U	bacteria	Bacillus	n/a	RNR2(29);LPIN2(20);RPPH1(8);TIE1(8);FN1(5)