# 2020/04/12 17:06:37
# HUMAN	Target (Host) organism
# RNA	Sequencing source
# ERR188035	Replication ID
# ERR188035	Sample ID
# ERR188035_1	Read1
# ERR188035_2	Read2
R1	       31020053 (100.0000%)	[A] Total raw reads
R1	       30403131 (98.0112%)	[B] Total reads after QC of (A)
R1		
R1	       30403131 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	       57545945 (94.6382%)	[B-3] Total mapped reads of (B-2)x2
R1	        3260317 (5.3618%)	[B-4] Total unmapped reads of (B-2)x2
R1	       28796446 (94.7154%)	[F] Total mapped reads of (B-2)
R1	        1606685 (5.2846%)	[G] Total unmapped reads of (B-2)
R1	          65161 (0.2143%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	       30337970 (99.7857%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	          36550 (0.1202%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      1204.761	[I-3] RPMH of (I-1)
R1	      1202.179	[I-4] PPM of (I-1)
R1	    560918.341	[I-5] RPMU of (I-1)
R1	             62 (0.0002%)	[I-6] Total chimeric reads of (I-1)
R1	         2.044	[I-7] RPMH of (I-6)
R1	         2.039	[I-8] PPM of (I-6)
R1	       951.489	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	       31020053 (100.0000%)	[A] Total raw reads
R2	       30403131 (98.0112%)	[B] Total reads after QC of (A)
R2		
R2	       30403131 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	       57545945 (94.6382%)	[B-3] Total mapped reads of (B-2)x2
R2	        3260317 (5.3618%)	[B-4] Total unmapped reads of (B-2)x2
R2	       28749499 (94.5610%)	[F] Total mapped reads of (B-2)
R2	        1653632 (5.4390%)	[G] Total unmapped reads of (B-2)
R2	          93922 (0.3089%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	       30309209 (99.6911%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	          36187 (0.1190%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      1193.928	[I-3] RPMH of (I-1)
R2	      1190.239	[I-4] PPM of (I-1)
R2	    385287.792	[I-5] RPMU of (I-1)
R2	             60 (0.0002%)	[I-6] Total chimeric reads of (I-1)
R2	         1.980	[I-7] RPMH of (I-6)
R2	         1.973	[I-8] PPM of (I-6)
R2	       638.828	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
80.9054	80.7320	37668.3292	2711	720	1991	2454.506	202202	ALL_R1	bacteria	Nocardia	0.0
3.2331	3.2262	1505.2869	121	41	80	98.086	8908	ALL_R1	bacteria	Escherichia	5.69e-81
1.9259	1.9218	896.6867	85	30	55	58.429	6239	ALL_R1	bacteria	Cutibacterium	2.97e-28
1.5895	1.5861	740.0592	91	48	43	48.223	6717	ALL_R1	bacteria	Methylobacterium	9.24e-11
<<
18.2310	18.1920	8488.0987	588	52	536	553.093	42704	ALL_R1	fungi	Saccharomyces	0.0
<<
605.4459	604.1483	281886.4044	18368	0	18368	18368.000	1362933	ALL_R1	viral	Lymphocryptovirus	0.0
<<
79.4477	79.2023	25638.2637	2684	713	1971	2407.997	199044	ALL_R2	bacteria	Nocardia	0.0
3.1767	3.1668	1025.1272	125	46	79	96.282	8989	ALL_R2	bacteria	Escherichia	1.72e-80
2.0305	2.0242	655.2565	86	27	59	61.543	6346	ALL_R2	bacteria	Cutibacterium	1.25e-34
1.6526	1.6475	533.3149	90	45	45	50.090	6593	ALL_R2	bacteria	Methylobacterium	2.35e-12
<<
18.0508	17.9950	5825.0996	582	50	532	547.105	42778	ALL_R2	fungi	Saccharomyces	0.0
<<
604.2058	602.3393	194980.9416	18313	0	18313	18313.000	1356818	ALL_R2	viral	Lymphocryptovirus	0.0
<<
0.3060	0.3054	142.4779	30	29	1	9.284	1868	R1U	bacteria	Mesorhizobium	n/a	
0.2444	0.2439	113.8104	9	5	4	7.416	543	R1U	bacteria	Nocardia	n/a	
<<
0.0330	0.0329	15.3466	1	0	1	1.000	67	R1U	fungi	Malassezia	n/a	
0.0330	0.0329	15.3466	1	0	1	1.000	40	R1U	fungi	Phialophora	n/a	
<<
0.7252	0.7236	337.6253	22	0	22	22.000	1590	R1U	viral	Lymphocryptovirus	n/a	
<<
0.2310	0.2302	74.5299	7	0	7	7.000	321	R2U	bacteria	Nocardia	n/a	
0.1016	0.1013	32.7932	9	8	1	3.080	558	R2U	bacteria	Paenibacillus	n/a	
0.0330	0.0329	10.6471	1	0	1	1.000	71	R2U	bacteria	Lachnoclostridium	n/a	
0.0330	0.0329	10.6471	1	0	1	1.000	69	R2U	bacteria	Neorickettsia	n/a	
0.0330	0.0329	10.6471	1	0	1	1.000	40	R2U	bacteria	Salinispira	n/a	
0.0330	0.0329	10.6471	1	0	1	1.000	40	R2U	bacteria	Burkholderia	n/a	
0.0330	0.0329	10.6471	1	0	1	1.000	36	R2U	bacteria	Ureaplasma	n/a	
0.0330	0.0329	10.6471	1	0	1	1.000	36	R2U	bacteria	Thermoanaerobacterium	n/a	
<<
0.0330	0.0329	10.6471	1	0	1	1.000	75	R2U	fungi	Schizosaccharomyces	n/a	
0.0330	0.0329	10.6471	1	0	1	1.000	75	R2U	fungi	Diplodia	n/a	
0.0330	0.0329	10.6471	1	0	1	1.000	74	R2U	fungi	Cladophialophora	n/a	
0.0330	0.0329	10.6471	1	0	1	1.000	71	R2U	fungi	Stereum	n/a	
0.0330	0.0329	10.6471	1	0	1	1.000	59	R2U	fungi	Pyrenophora	n/a	
0.0330	0.0329	10.6471	1	0	1	1.000	47	R2U	fungi	Baudoinia	n/a	
0.0330	0.0329	10.6471	1	0	1	1.000	41	R2U	fungi	Verticillium	n/a	
0.0330	0.0329	10.6471	1	0	1	1.000	41	R2U	fungi	Trichoderma	n/a	
0.0330	0.0329	10.6471	1	0	1	1.000	41	R2U	fungi	Batrachochytrium	n/a	
0.0330	0.0329	10.6471	1	0	1	1.000	40	R2U	fungi	Kwoniella	n/a	
0.0330	0.0329	10.6471	1	0	1	1.000	39	R2U	fungi	Microsporum	n/a	
0.0330	0.0329	10.6471	1	0	1	1.000	38	R2U	fungi	Paraphaeosphaeria	n/a	
0.0330	0.0329	10.6471	1	0	1	1.000	37	R2U	fungi	Phycomyces	n/a	
<<
0.5609	0.5592	181.0013	17	0	17	17.000	1117	R2U	viral	Lymphocryptovirus	n/a