# 2020/04/16 06:17:20
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# SRR788685	Replication ID
# SRP000542	Sample ID
# SRR788685_1.filt	Read1
# SRR788685_2.filt	Read2
R1	       11693596 (100.0000%)	[A] Total raw reads
R1	        9725279 (83.1676%)	[B] Total reads after QC of (A)
R1		
R1	        9725279 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	       17894370 (91.9993%)	[B-3] Total mapped reads of (B-2)x2
R1	        1556188 (8.0007%)	[B-4] Total unmapped reads of (B-2)x2
R1	        8981814 (92.3553%)	[F] Total mapped reads of (B-2)
R1	         743465 (7.6447%)	[G] Total unmapped reads of (B-2)
R1	          82346 (0.8467%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        9642933 (99.1533%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           9634 (0.0991%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	       999.074	[I-3] RPMH of (I-1)
R1	       990.614	[I-4] PPM of (I-1)
R1	    116994.147	[I-5] RPMU of (I-1)
R1	             63 (0.0006%)	[I-6] Total chimeric reads of (I-1)
R1	         6.533	[I-7] RPMH of (I-6)
R1	         6.478	[I-8] PPM of (I-6)
R1	       765.065	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	       11693596 (100.0000%)	[A] Total raw reads
R2	        9725279 (83.1676%)	[B] Total reads after QC of (A)
R2		
R2	        9725279 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	       17894370 (91.9993%)	[B-3] Total mapped reads of (B-2)x2
R2	        1556188 (8.0007%)	[B-4] Total unmapped reads of (B-2)x2
R2	        8912556 (91.6432%)	[F] Total mapped reads of (B-2)
R2	         812723 (8.3568%)	[G] Total unmapped reads of (B-2)
R2	         103284 (1.0620%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        9621995 (98.9380%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           9511 (0.0978%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       988.465	[I-3] RPMH of (I-1)
R2	       977.967	[I-4] PPM of (I-1)
R2	     92085.899	[I-5] RPMU of (I-1)
R2	             49 (0.0005%)	[I-6] Total chimeric reads of (I-1)
R2	         5.093	[I-7] RPMH of (I-6)
R2	         5.038	[I-8] PPM of (I-6)
R2	       474.420	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
1.3534	1.3420	158.4898	20	11	9	13.051	1213	ALL_R1	bacteria	Alcanivorax	1.62e-04
<<
995.5477	987.1182	116581.2547	9600	0	9600	9600.000	923608	ALL_R1	viral	Lymphocryptovirus	0.0
<<
2.2328	2.2091	208.0090	36	23	13	21.484	2289	ALL_R2	bacteria	Alcanivorax	7.31e-10
<<
982.6445	972.2086	91543.7047	9455	0	9455	9455.000	872538	ALL_R2	viral	Lymphocryptovirus	0.0
<<
6.5333	6.4780	765.0645	63	0	63	63.000	5946	R1U	viral	Lymphocryptovirus	n/a	
<<
0.1039	0.1028	9.6820	1	0	1	1.000	37	R2U	bacteria	Dehalogenimonas	n/a	
0.1039	0.1028	9.6820	1	0	1	1.000	36	R2U	bacteria	Cellulomonas	n/a	
0.1039	0.1028	9.6820	1	0	1	1.000	101	R2U	bacteria	Alcanivorax	n/a	
<<
0.1039	0.1028	9.6820	1	0	1	1.000	40	R2U	fungi	Aspergillus	n/a	
<<
4.6768	4.6271	435.6919	45	0	45	45.000	3956	R2U	viral	Lymphocryptovirus	n/a