# 2020/04/15 15:05:04
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# SRR788629	Replication ID
# SRP000542	Sample ID
# SRR788629_1.filt	Read1
# SRR788629_2.filt	Read2
R1	       10854372 (100.0000%)	[A] Total raw reads
R1	        8553107 (78.7987%)	[B] Total reads after QC of (A)
R1		
R1	        8553107 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	       15459958 (90.3763%)	[B-3] Total mapped reads of (B-2)x2
R1	        1646256 (9.6237%)	[B-4] Total unmapped reads of (B-2)x2
R1	        7799152 (91.1850%)	[F] Total mapped reads of (B-2)
R1	         753955 (8.8150%)	[G] Total unmapped reads of (B-2)
R1	          96272 (1.1256%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        8456835 (98.8744%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           7657 (0.0895%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	       905.421	[I-3] RPMH of (I-1)
R1	       895.230	[I-4] PPM of (I-1)
R1	     79535.067	[I-5] RPMU of (I-1)
R1	             33 (0.0004%)	[I-6] Total chimeric reads of (I-1)
R1	         3.902	[I-7] RPMH of (I-6)
R1	         3.858	[I-8] PPM of (I-6)
R1	       342.779	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	       10854372 (100.0000%)	[A] Total raw reads
R2	        8553107 (78.7987%)	[B] Total reads after QC of (A)
R2		
R2	        8553107 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	       15459958 (90.3763%)	[B-3] Total mapped reads of (B-2)x2
R2	        1646256 (9.6237%)	[B-4] Total unmapped reads of (B-2)x2
R2	        7660806 (89.5675%)	[F] Total mapped reads of (B-2)
R2	         892301 (10.4325%)	[G] Total unmapped reads of (B-2)
R2	         146111 (1.7083%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        8406996 (98.2917%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           7537 (0.0881%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       896.515	[I-3] RPMH of (I-1)
R2	       881.200	[I-4] PPM of (I-1)
R2	     51584.070	[I-5] RPMU of (I-1)
R2	             36 (0.0004%)	[I-6] Total chimeric reads of (I-1)
R2	         4.282	[I-7] RPMH of (I-6)
R2	         4.209	[I-8] PPM of (I-6)
R2	       246.388	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
1.6436	1.6251	144.3826	24	16	8	13.900	1738	ALL_R1	bacteria	Alcanivorax	9.77e-06
<<
901.4011	891.2551	79181.9013	7623	0	7623	7623.000	704798	ALL_R1	viral	Lymphocryptovirus	0.0
<<
4.0644	3.9949	233.8565	60	41	19	34.169	3754	ALL_R2	bacteria	Alcanivorax	4.43e-35
<<
887.1183	871.9638	51043.3848	7458	0	7458	7458.000	677202	ALL_R2	viral	Lymphocryptovirus	0.0
<<
3.7839	3.7413	332.3916	32	0	32	32.000	2869	R1U	viral	Lymphocryptovirus	n/a	
<<
0.1189	0.1169	6.8441	1	0	1	1.000	39	R2U	bacteria	Arcobacter	n/a	
0.1189	0.1169	6.8441	1	0	1	1.000	37	R2U	bacteria	Mycoplasma	n/a	
0.1189	0.1169	6.8441	1	0	1	1.000	37	R2U	bacteria	Aggregatibacter	n/a	
<<
3.6874	3.6244	212.1675	31	0	31	31.000	2946	R2U	viral	Lymphocryptovirus	n/a