# 2018/03/14 16:42:16
# HUMAN	Target (Host) organism
# RNA	Sequencing source
# ENCSR919MZM_1	Replication ID
# ENCSR919MZM	Sample ID
# ENCFF126HPJ	Read1
# ENCFF876WTO	Read2
R1	  88048572 (100.0000%)	[A] Total raw reads
R1	  84383192 (95.8371%)	[B] Total reads after QC of (A)
R1		
R1	  84383192 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	 157649189 (93.4127%)	[B-3] Total mapped reads of (B-2)x2
R1	  11117195 (6.5873%)	[B-4] Total unmapped reads of (B-2)x2
R1	  78818620 (93.4056%)	[F] Total mapped reads of (B-2)
R1	   5564572 (6.5944%)	[G] Total unmapped reads of (B-2)
R1	   3634620 (4.3073%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	  80748572 (95.6927%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	   1570281 (1.8609%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	     19446.548	[I-3] RPMH of (I-1)
R1	     18608.931	[I-4] PPM of (I-1)
R1	       779 (0.0009%)	[I-5] Total chimeric reads of (I-1)
R1	         9.647	[I-7] RPMH of (I-5)
R1	         9.232	[I-8] PPM of (I-5)
R1		
## -----------------------------------------

R2	  88048572 (100.0000%)	[A] Total raw reads
R2	  84383192 (95.8371%)	[B] Total reads after QC of (A)
R2		
R2	  84383192 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	 157649189 (93.4127%)	[B-3] Total mapped reads of (B-2)x2
R2	  11117195 (6.5873%)	[B-4] Total unmapped reads of (B-2)x2
R2	  78830569 (93.4198%)	[F] Total mapped reads of (B-2)
R2	   5552623 (6.5802%)	[G] Total unmapped reads of (B-2)
R2	   3640334 (4.3141%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	  80742858 (95.6859%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	   1573114 (1.8643%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	     19483.011	[I-3] RPMH of (I-1)
R2	     18642.504	[I-4] PPM of (I-1)
R2	       522 (0.0006%)	[I-5] Total chimeric reads of (I-1)
R2	         6.465	[I-7] RPMH of (I-5)
R2	         6.186	[I-8] PPM of (I-5)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMH   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
14515.0852	13889.8799	1192162	20763	1171399	1172072.405	119698328	ALL_R1	bacteria	Bacillus	0.0
729.7128	698.2820	328778	301240	27538	58923.268	32890662	ALL_R1	bacteria	Pseudomonas	0.0
403.3855	386.0105	51011	23092	27919	32572.800	5084768	ALL_R1	bacteria	Sphingomonas	0.0
78.6952	75.3055	15095	9030	6065	6354.521	1509145	ALL_R1	bacteria	Bradyrhizobium	0.0
43.3498	41.4826	46503	45822	681	3500.431	4674983	ALL_R1	bacteria	Escherichia	1.03e-45
35.5395	34.0087	14175	12542	1633	2869.765	1423987	ALL_R1	bacteria	Cutibacterium	9.89e-203
<<
14549.2047	13921.5446	1190365	15985	1174380	1174744.372	119450671	ALL_R2	bacteria	Bacillus	0.0
720.9767	689.8734	330534	298576	31958	58213.720	32463611	ALL_R2	bacteria	Pseudomonas	0.0
390.9111	374.0470	44552	17565	26987	31563.280	4380468	ALL_R2	bacteria	Sphingomonas	0.0
74.0545	70.8597	12400	6651	5749	5979.368	1206964	ALL_R2	bacteria	Bradyrhizobium	0.0
42.1686	40.3494	43039	42290	749	3404.815	4283977	ALL_R2	bacteria	Escherichia	7.06e-69
37.8611	36.2277	13750	12119	1631	3057.013	1367296	ALL_R2	bacteria	Cutibacterium	7.62e-201
28.5439	27.3125	13800	12692	1108	2304.715	1371805	ALL_R2	bacteria	Corynebacterium	7.19e-07
<<
5.8971	5.6431	565	89	476	476.184	55777	R1U	bacteria	Bacillus	n/a	RN7SL1(197);ZC3H7B(51);JAK1(47);GALNT1(33);SUZ12(15)
<<
5.6111	5.3691	461	8	453	453.058	43931	R2U	bacteria	Bacillus	n/a	RN7SL2(53);S100A16(44);RNR2(42);RNR1(29);AES(20)