# 2020/04/12 12:43:06
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR243788	Replication ID
# SRP000547	Sample ID
# ERR243788_1.filt	Read1
# ERR243788_2.filt	Read2
R1	        2627697 (100.0000%)	[A] Total raw reads
R1	        2579984 (98.1842%)	[B] Total reads after QC of (A)
R1		
R1	        2579984 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        4701518 (91.1153%)	[B-3] Total mapped reads of (B-2)x2
R1	         458450 (8.8847%)	[B-4] Total unmapped reads of (B-2)x2
R1	        2372709 (91.9660%)	[F] Total mapped reads of (B-2)
R1	         207275 (8.0340%)	[G] Total unmapped reads of (B-2)
R1	          29564 (1.1459%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        2550420 (98.8541%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           8984 (0.3482%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      3522.557	[I-3] RPMH of (I-1)
R1	      3482.192	[I-4] PPM of (I-1)
R1	    303883.101	[I-5] RPMU of (I-1)
R1	             10 (0.0004%)	[I-6] Total chimeric reads of (I-1)
R1	         3.921	[I-7] RPMH of (I-6)
R1	         3.876	[I-8] PPM of (I-6)
R1	       338.249	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        2627697 (100.0000%)	[A] Total raw reads
R2	        2579984 (98.1842%)	[B] Total reads after QC of (A)
R2		
R2	        2579984 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        4701518 (91.1153%)	[B-3] Total mapped reads of (B-2)x2
R2	         458450 (8.8847%)	[B-4] Total unmapped reads of (B-2)x2
R2	        2328809 (90.2645%)	[F] Total mapped reads of (B-2)
R2	         251175 (9.7355%)	[G] Total unmapped reads of (B-2)
R2	          46350 (1.7965%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        2533634 (98.2035%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           8741 (0.3388%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      3449.985	[I-3] RPMH of (I-1)
R2	      3388.006	[I-4] PPM of (I-1)
R2	    188586.839	[I-5] RPMU of (I-1)
R2	             10 (0.0004%)	[I-6] Total chimeric reads of (I-1)
R2	         3.947	[I-7] RPMH of (I-6)
R2	         3.876	[I-8] PPM of (I-6)
R2	       215.750	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
3519.0282	3478.7037	303578.6768	8975	0	8975	8975.000	895062	ALL_R1	viral	Lymphocryptovirus	0.0
<<
3447.2224	3385.2923	188435.8145	8734	0	8734	8734.000	869890	ALL_R2	viral	Lymphocryptovirus	0.0
<<
3.9209	3.8760	338.2492	10	0	10	10.000	997	R1U	viral	Lymphocryptovirus	n/a	
<<
3.9469	3.8760	215.7497	10	0	10	10.000	993	R2U	viral	Lymphocryptovirus	n/a