# 2020/04/08 04:17:36
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR243628	Replication ID
# SRP000547	Sample ID
# ERR243628_1.filt	Read1
# ERR243628_2.filt	Read2
R1	        1561985 (100.0000%)	[A] Total raw reads
R1	        1535014 (98.2733%)	[B] Total reads after QC of (A)
R1		
R1	        1535014 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        2798328 (91.1499%)	[B-3] Total mapped reads of (B-2)x2
R1	         271700 (8.8501%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1410755 (91.9050%)	[F] Total mapped reads of (B-2)
R1	         124259 (8.0950%)	[G] Total unmapped reads of (B-2)
R1	          33593 (2.1884%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        1501421 (97.8116%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	          19308 (1.2578%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	     12859.817	[I-3] RPMH of (I-1)
R1	     12578.387	[I-4] PPM of (I-1)
R1	    574762.599	[I-5] RPMU of (I-1)
R1	             20 (0.0013%)	[I-6] Total chimeric reads of (I-1)
R1	        13.321	[I-7] RPMH of (I-6)
R1	        13.029	[I-8] PPM of (I-6)
R1	       595.362	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        1561985 (100.0000%)	[A] Total raw reads
R2	        1535014 (98.2733%)	[B] Total reads after QC of (A)
R2		
R2	        1535014 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        2798328 (91.1499%)	[B-3] Total mapped reads of (B-2)x2
R2	         271700 (8.8501%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1387573 (90.3948%)	[F] Total mapped reads of (B-2)
R2	         147441 (9.6052%)	[G] Total unmapped reads of (B-2)
R2	          42620 (2.7765%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1492394 (97.2235%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	          18927 (1.2330%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	     12682.308	[I-3] RPMH of (I-1)
R2	     12330.181	[I-4] PPM of (I-1)
R2	    444087.283	[I-5] RPMU of (I-1)
R2	             13 (0.0008%)	[I-6] Total chimeric reads of (I-1)
R2	         8.711	[I-7] RPMH of (I-6)
R2	         8.469	[I-8] PPM of (I-6)
R2	       305.021	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
12849.8269	12568.6150	574316.0778	19293	0	19293	19293.000	1925564	ALL_R1	viral	Lymphocryptovirus	0.0
<<
12672.9269	12321.0603	443758.7987	18913	0	18913	18913.000	1884715	ALL_R2	viral	Lymphocryptovirus	0.0
<<
13.3207	13.0292	595.3621	20	0	20	20.000	1998	R1U	viral	Lymphocryptovirus	n/a	
<<
8.7108	8.4690	305.0211	13	0	13	13.000	1299	R2U	viral	Lymphocryptovirus	n/a