# 2020/04/07 21:17:07
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR243439	Replication ID
# SRP000547	Sample ID
# ERR243439_1.filt	Read1
# ERR243439_2.filt	Read2
R1	        1599473 (100.0000%)	[A] Total raw reads
R1	        1572166 (98.2928%)	[B] Total reads after QC of (A)
R1		
R1	        1572166 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        2879969 (91.5924%)	[B-3] Total mapped reads of (B-2)x2
R1	         264363 (8.4076%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1447386 (92.0632%)	[F] Total mapped reads of (B-2)
R1	         124780 (7.9368%)	[G] Total unmapped reads of (B-2)
R1	          33931 (2.1582%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        1538235 (97.8418%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	          19668 (1.2510%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	     12786.083	[I-3] RPMH of (I-1)
R1	     12510.129	[I-4] PPM of (I-1)
R1	    579646.930	[I-5] RPMU of (I-1)
R1	             19 (0.0012%)	[I-6] Total chimeric reads of (I-1)
R1	        12.352	[I-7] RPMH of (I-6)
R1	        12.085	[I-8] PPM of (I-6)
R1	       559.960	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        1599473 (100.0000%)	[A] Total raw reads
R2	        1572166 (98.2928%)	[B] Total reads after QC of (A)
R2		
R2	        1572166 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        2879969 (91.5924%)	[B-3] Total mapped reads of (B-2)x2
R2	         264363 (8.4076%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1432583 (91.1216%)	[F] Total mapped reads of (B-2)
R2	         139583 (8.8784%)	[G] Total unmapped reads of (B-2)
R2	          39660 (2.5226%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1532506 (97.4774%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	          19527 (1.2420%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	     12741.875	[I-3] RPMH of (I-1)
R2	     12420.444	[I-4] PPM of (I-1)
R2	    492360.060	[I-5] RPMU of (I-1)
R2	              6 (0.0004%)	[I-6] Total chimeric reads of (I-1)
R2	         3.915	[I-7] RPMH of (I-6)
R2	         3.816	[I-8] PPM of (I-6)
R2	       151.286	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
12778.9317	12503.1326	579322.7432	19657	0	19657	19657.000	1960449	ALL_R1	viral	Lymphocryptovirus	0.0
<<
12734.0448	12412.8114	492057.4887	19515	0	19515	19515.000	1945433	ALL_R2	viral	Lymphocryptovirus	0.0
<<
12.3518	12.0852	559.9599	19	0	19	19.000	1895	R1U	viral	Lymphocryptovirus	n/a	
<<
3.9152	3.8164	151.2859	6	0	6	6.000	599	R2U	viral	Lymphocryptovirus	n/a