# 2020/04/11 19:42:38
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR243172	Replication ID
# SRP000547	Sample ID
# ERR243172_1.filt	Read1
# ERR243172_2.filt	Read2
R1	        2673348 (100.0000%)	[A] Total raw reads
R1	        2628093 (98.3072%)	[B] Total reads after QC of (A)
R1		
R1	        2628093 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        4810912 (91.5286%)	[B-3] Total mapped reads of (B-2)x2
R1	         445274 (8.4714%)	[B-4] Total unmapped reads of (B-2)x2
R1	        2421541 (92.1406%)	[F] Total mapped reads of (B-2)
R1	         206552 (7.8594%)	[G] Total unmapped reads of (B-2)
R1	          29525 (1.1234%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        2598568 (98.8766%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           9271 (0.3528%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      3567.734	[I-3] RPMH of (I-1)
R1	      3527.653	[I-4] PPM of (I-1)
R1	    314005.080	[I-5] RPMU of (I-1)
R1	             15 (0.0006%)	[I-6] Total chimeric reads of (I-1)
R1	         5.772	[I-7] RPMH of (I-6)
R1	         5.708	[I-8] PPM of (I-6)
R1	       508.044	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        2673348 (100.0000%)	[A] Total raw reads
R2	        2628093 (98.3072%)	[B] Total reads after QC of (A)
R2		
R2	        2628093 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        4810912 (91.5286%)	[B-3] Total mapped reads of (B-2)x2
R2	         445274 (8.4714%)	[B-4] Total unmapped reads of (B-2)x2
R2	        2389371 (90.9165%)	[F] Total mapped reads of (B-2)
R2	         238722 (9.0835%)	[G] Total unmapped reads of (B-2)
R2	          41931 (1.5955%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        2586162 (98.4045%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           9114 (0.3468%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      3524.141	[I-3] RPMH of (I-1)
R2	      3467.914	[I-4] PPM of (I-1)
R2	    217357.087	[I-5] RPMU of (I-1)
R2	             10 (0.0004%)	[I-6] Total chimeric reads of (I-1)
R2	         3.867	[I-7] RPMH of (I-6)
R2	         3.805	[I-8] PPM of (I-6)
R2	       238.487	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
3566.1949	3526.1309	313869.6020	9267	0	9267	9267.000	923575	ALL_R1	viral	Lymphocryptovirus	0.0
<<
3521.4345	3465.2503	217190.1457	9107	0	9107	9107.000	907486	ALL_R2	viral	Lymphocryptovirus	0.0
<<
5.7724	5.7076	508.0440	15	0	15	15.000	1495	R1U	viral	Lymphocryptovirus	n/a	
<<
0.3867	0.3805	23.8487	1	0	1	1.000	99	R2U	bacteria	Alcanivorax	n/a	
<<
3.4801	3.4245	214.6383	9	0	9	9.000	896	R2U	viral	Lymphocryptovirus	n/a