# 2020/04/14 08:51:03
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR239607	Replication ID
# SRP000542	Sample ID
# ERR239607_1.filt	Read1
# ERR239607_2.filt	Read2
R1	        3467101 (100.0000%)	[A] Total raw reads
R1	        3406913 (98.2640%)	[B] Total reads after QC of (A)
R1		
R1	        3406913 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        6273646 (92.0723%)	[B-3] Total mapped reads of (B-2)x2
R1	         540180 (7.9277%)	[B-4] Total unmapped reads of (B-2)x2
R1	        3153415 (92.5593%)	[F] Total mapped reads of (B-2)
R1	         253498 (7.4407%)	[G] Total unmapped reads of (B-2)
R1	          45027 (1.3216%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        3361886 (98.6784%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	          17169 (0.5039%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      5106.955	[I-3] RPMH of (I-1)
R1	      5039.459	[I-4] PPM of (I-1)
R1	    381304.551	[I-5] RPMU of (I-1)
R1	             12 (0.0004%)	[I-6] Total chimeric reads of (I-1)
R1	         3.569	[I-7] RPMH of (I-6)
R1	         3.522	[I-8] PPM of (I-6)
R1	       266.507	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        3467101 (100.0000%)	[A] Total raw reads
R2	        3406913 (98.2640%)	[B] Total reads after QC of (A)
R2		
R2	        3406913 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        6273646 (92.0723%)	[B-3] Total mapped reads of (B-2)x2
R2	         540180 (7.9277%)	[B-4] Total unmapped reads of (B-2)x2
R2	        3120231 (91.5853%)	[F] Total mapped reads of (B-2)
R2	         286682 (8.4147%)	[G] Total unmapped reads of (B-2)
R2	          58690 (1.7227%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        3348223 (98.2773%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	          17044 (0.5003%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      5090.461	[I-3] RPMH of (I-1)
R2	      5002.769	[I-4] PPM of (I-1)
R2	    290407.224	[I-5] RPMU of (I-1)
R2	             13 (0.0004%)	[I-6] Total chimeric reads of (I-1)
R2	         3.883	[I-7] RPMH of (I-6)
R2	         3.816	[I-8] PPM of (I-6)
R2	       221.503	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
5100.7084	5033.2955	380838.1638	17148	0	17148	17148.000	1709774	ALL_R1	viral	Lymphocryptovirus	0.0
<<
5083.5921	4996.0184	290015.3348	17021	0	17021	17021.000	1699292	ALL_R2	viral	Lymphocryptovirus	0.0
<<
3.2720	3.2287	244.2979	11	0	11	11.000	1097	R1U	viral	Lymphocryptovirus	n/a	
<<
3.5840	3.5223	204.4641	12	0	12	12.000	1196	R2U	viral	Lymphocryptovirus	n/a	
0.2987	0.2935	17.0387	1	0	1	1.000	99	R2U	viral	Phix174microvirus	n/a