# 2020/04/20 17:38:05
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR239536	Replication ID
# SRP000542	Sample ID
# ERR239536_1.filt	Read1
# ERR239536_2.filt	Read2
R1	        9377008 (100.0000%)	[A] Total raw reads
R1	        9222841 (98.3559%)	[B] Total reads after QC of (A)
R1		
R1	        9222841 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	       16985905 (92.0861%)	[B-3] Total mapped reads of (B-2)x2
R1	        1459777 (7.9139%)	[B-4] Total unmapped reads of (B-2)x2
R1	        8536113 (92.5541%)	[F] Total mapped reads of (B-2)
R1	         686728 (7.4459%)	[G] Total unmapped reads of (B-2)
R1	          92818 (1.0064%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        9130023 (98.9936%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	          15980 (0.1733%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      1750.269	[I-3] RPMH of (I-1)
R1	      1732.655	[I-4] PPM of (I-1)
R1	    172164.882	[I-5] RPMU of (I-1)
R1	             34 (0.0004%)	[I-6] Total chimeric reads of (I-1)
R1	         3.724	[I-7] RPMH of (I-6)
R1	         3.686	[I-8] PPM of (I-6)
R1	       366.308	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        9377008 (100.0000%)	[A] Total raw reads
R2	        9222841 (98.3559%)	[B] Total reads after QC of (A)
R2		
R2	        9222841 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	       16985905 (92.0861%)	[B-3] Total mapped reads of (B-2)x2
R2	        1459777 (7.9139%)	[B-4] Total unmapped reads of (B-2)x2
R2	        8449792 (91.6181%)	[F] Total mapped reads of (B-2)
R2	         773049 (8.3819%)	[G] Total unmapped reads of (B-2)
R2	         127938 (1.3872%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        9094903 (98.6128%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	          15751 (0.1708%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      1731.849	[I-3] RPMH of (I-1)
R2	      1707.825	[I-4] PPM of (I-1)
R2	    123114.321	[I-5] RPMU of (I-1)
R2	             28 (0.0003%)	[I-6] Total chimeric reads of (I-1)
R2	         3.079	[I-7] RPMH of (I-6)
R2	         3.036	[I-8] PPM of (I-6)
R2	       218.856	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
1749.3932	1731.7874	172078.6916	15972	0	15972	15972.000	1592184	ALL_R1	viral	Lymphocryptovirus	0.0
<<
1731.1894	1707.1746	123067.4233	15745	0	15745	15745.000	1569562	ALL_R2	viral	Lymphocryptovirus	0.0
<<
3.7240	3.6865	366.3083	34	0	34	34.000	3394	R1U	viral	Lymphocryptovirus	n/a	
<<
2.9687	2.9275	211.0397	27	0	27	27.000	2696	R2U	viral	Lymphocryptovirus	n/a	
0.1100	0.1084	7.8163	1	0	1	1.000	97	R2U	viral	Phix174microvirus	n/a