# 2020/04/18 19:18:35
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR239530	Replication ID
# SRP000542	Sample ID
# ERR239530_1.filt	Read1
# ERR239530_2.filt	Read2
R1	        8796189 (100.0000%)	[A] Total raw reads
R1	        8653077 (98.3730%)	[B] Total reads after QC of (A)
R1		
R1	        8653077 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	       16009073 (92.5051%)	[B-3] Total mapped reads of (B-2)x2
R1	        1297081 (7.4949%)	[B-4] Total unmapped reads of (B-2)x2
R1	        8043309 (92.9532%)	[F] Total mapped reads of (B-2)
R1	         609768 (7.0468%)	[G] Total unmapped reads of (B-2)
R1	          54059 (0.6247%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        8599018 (99.3753%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           3139 (0.0363%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	       365.042	[I-3] RPMH of (I-1)
R1	       362.761	[I-4] PPM of (I-1)
R1	     58066.187	[I-5] RPMU of (I-1)
R1	              2 (0.0000%)	[I-6] Total chimeric reads of (I-1)
R1	         0.233	[I-7] RPMH of (I-6)
R1	         0.231	[I-8] PPM of (I-6)
R1	        36.997	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        8796189 (100.0000%)	[A] Total raw reads
R2	        8653077 (98.3730%)	[B] Total reads after QC of (A)
R2		
R2	        8653077 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	       16009073 (92.5051%)	[B-3] Total mapped reads of (B-2)x2
R2	        1297081 (7.4949%)	[B-4] Total unmapped reads of (B-2)x2
R2	        7965764 (92.0570%)	[F] Total mapped reads of (B-2)
R2	         687313 (7.9430%)	[G] Total unmapped reads of (B-2)
R2	          85021 (0.9826%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        8568056 (99.0174%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           3056 (0.0353%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       356.674	[I-3] RPMH of (I-1)
R2	       353.169	[I-4] PPM of (I-1)
R2	     35944.061	[I-5] RPMU of (I-1)
R2	              5 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R2	         0.584	[I-7] RPMH of (I-6)
R2	         0.578	[I-8] PPM of (I-6)
R2	        58.809	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
364.8091	362.5300	58029.1903	3137	0	3137	3137.000	312688	ALL_R1	viral	Lymphocryptovirus	0.0
<<
356.5570	353.0536	35932.2991	3055	0	3055	3055.000	304534	ALL_R2	viral	Lymphocryptovirus	0.0
<<
0.2326	0.2311	36.9966	2	0	2	2.000	200	R1U	viral	Lymphocryptovirus	n/a	
<<
0.5836	0.5778	58.8090	5	0	5	5.000	499	R2U	viral	Lymphocryptovirus	n/a