# 2020/04/06 22:29:33
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR243878	Replication ID
# SRP000547	Sample ID
# ERR243878_1.filt	Read1
# ERR243878_2.filt	Read2
R1	        1737220 (100.0000%)	[A] Total raw reads
R1	        1703109 (98.0365%)	[B] Total reads after QC of (A)
R1		
R1	        1703109 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        3106076 (91.1884%)	[B-3] Total mapped reads of (B-2)x2
R1	         300142 (8.8116%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1567069 (92.0123%)	[F] Total mapped reads of (B-2)
R1	         136040 (7.9877%)	[G] Total unmapped reads of (B-2)
R1	          23832 (1.3993%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        1679277 (98.6007%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           9636 (0.5658%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      5738.184	[I-3] RPMH of (I-1)
R1	      5657.888	[I-4] PPM of (I-1)
R1	    404330.312	[I-5] RPMU of (I-1)
R1	             24 (0.0014%)	[I-6] Total chimeric reads of (I-1)
R1	        14.292	[I-7] RPMH of (I-6)
R1	        14.092	[I-8] PPM of (I-6)
R1	      1007.049	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        1737220 (100.0000%)	[A] Total raw reads
R2	        1703109 (98.0365%)	[B] Total reads after QC of (A)
R2		
R2	        1703109 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        3106076 (91.1884%)	[B-3] Total mapped reads of (B-2)x2
R2	         300142 (8.8116%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1539007 (90.3646%)	[F] Total mapped reads of (B-2)
R2	         164102 (9.6354%)	[G] Total unmapped reads of (B-2)
R2	          34598 (2.0315%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1668511 (97.9685%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           9395 (0.5516%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      5630.769	[I-3] RPMH of (I-1)
R2	      5516.382	[I-4] PPM of (I-1)
R2	    271547.488	[I-5] RPMU of (I-1)
R2	             16 (0.0009%)	[I-6] Total chimeric reads of (I-1)
R2	         9.589	[I-7] RPMH of (I-6)
R2	         9.395	[I-8] PPM of (I-6)
R2	       462.454	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
5738.1838	5657.8880	404330.3122	9636	0	9636	9636.000	961472	ALL_R1	viral	Lymphocryptovirus	0.0
<<
5630.7690	5516.3821	271547.4883	9395	0	9395	9395.000	937348	ALL_R2	viral	Lymphocryptovirus	0.0
<<
14.2919	14.0919	1007.0493	24	0	24	24.000	2397	R1U	viral	Lymphocryptovirus	n/a	
<<
9.5894	9.3946	462.4545	16	0	16	16.000	1595	R2U	viral	Lymphocryptovirus	n/a