# 2020/04/07 14:02:04
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR162824	Replication ID
# SRP000547	Sample ID
# ERR162824_1.filt	Read1
# ERR162824_2.filt	Read2
R1	       21155011 (100.0000%)	[A] Total raw reads
R1	       20771699 (98.1881%)	[B] Total reads after QC of (A)
R1		
R1	       20771699 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	       37515601 (90.3046%)	[B-3] Total mapped reads of (B-2)x2
R1	        4027797 (9.6954%)	[B-4] Total unmapped reads of (B-2)x2
R1	       18962442 (91.2898%)	[F] Total mapped reads of (B-2)
R1	        1809257 (8.7102%)	[G] Total unmapped reads of (B-2)
R1	         412877 (1.9877%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	       20358822 (98.0123%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	         185095 (0.8911%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      9091.636	[I-3] RPMH of (I-1)
R1	      8910.923	[I-4] PPM of (I-1)
R1	    448305.428	[I-5] RPMU of (I-1)
R1	             12 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R1	         0.589	[I-7] RPMH of (I-6)
R1	         0.578	[I-8] PPM of (I-6)
R1	        29.064	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	       21155011 (100.0000%)	[A] Total raw reads
R2	       20771699 (98.1881%)	[B] Total reads after QC of (A)
R2		
R2	       20771699 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	       37515601 (90.3046%)	[B-3] Total mapped reads of (B-2)x2
R2	        4027797 (9.6954%)	[B-4] Total unmapped reads of (B-2)x2
R2	       18553159 (89.3194%)	[F] Total mapped reads of (B-2)
R2	        2218540 (10.6806%)	[G] Total unmapped reads of (B-2)
R2	         547560 (2.6361%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	       20224139 (97.3639%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	         181695 (0.8747%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      8984.066	[I-3] RPMH of (I-1)
R2	      8747.238	[I-4] PPM of (I-1)
R2	    331826.649	[I-5] RPMU of (I-1)
R2	             14 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R2	         0.692	[I-7] RPMH of (I-6)
R2	         0.674	[I-8] PPM of (I-6)
R2	        25.568	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
9090.0151	8909.3338	448225.5006	185062	0	185062	185062.000	18444489	ALL_R1	viral	Lymphocryptovirus	0.0
<<
8982.4838	8745.6977	331768.2081	181663	0	181663	181663.000	18054760	ALL_R2	viral	Lymphocryptovirus	0.0
<<
0.5403	0.5296	26.6423	11	0	11	11.000	1097	R1U	viral	Lymphocryptovirus	n/a	
<<
0.0494	0.0481	1.8263	1	0	1	1.000	36	R2U	bacteria	Clostridium	n/a	
<<
0.4450	0.4333	16.4366	9	0	9	9.000	894	R2U	viral	Lymphocryptovirus	n/a	
0.1483	0.1444	5.4789	3	0	3	3.000	292	R2U	viral	Phix174microvirus	n/a