# 2020/03/31 14:00:03
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR244862	Replication ID
# SRP000547	Sample ID
# ERR244862_1.filt	Read1
# ERR244862_2.filt	Read2
R1	        1735051 (100.0000%)	[A] Total raw reads
R1	        1701468 (98.0644%)	[B] Total reads after QC of (A)
R1		
R1	        1701468 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        3144697 (92.4113%)	[B-3] Total mapped reads of (B-2)x2
R1	         258239 (7.5887%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1581254 (92.9347%)	[F] Total mapped reads of (B-2)
R1	         120214 (7.0653%)	[G] Total unmapped reads of (B-2)
R1	          17020 (1.0003%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        1684448 (98.9997%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           5153 (0.3029%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      3059.162	[I-3] RPMH of (I-1)
R1	      3028.561	[I-4] PPM of (I-1)
R1	    302761.457	[I-5] RPMU of (I-1)
R1	             19 (0.0011%)	[I-6] Total chimeric reads of (I-1)
R1	        11.280	[I-7] RPMH of (I-6)
R1	        11.167	[I-8] PPM of (I-6)
R1	      1116.334	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        1735051 (100.0000%)	[A] Total raw reads
R2	        1701468 (98.0644%)	[B] Total reads after QC of (A)
R2		
R2	        1701468 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        3144697 (92.4113%)	[B-3] Total mapped reads of (B-2)x2
R2	         258239 (7.5887%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1563443 (91.8879%)	[F] Total mapped reads of (B-2)
R2	         138025 (8.1121%)	[G] Total unmapped reads of (B-2)
R2	          24269 (1.4264%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1677199 (98.5736%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           5023 (0.2952%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      2994.874	[I-3] RPMH of (I-1)
R2	      2952.157	[I-4] PPM of (I-1)
R2	    206971.857	[I-5] RPMU of (I-1)
R2	             22 (0.0013%)	[I-6] Total chimeric reads of (I-1)
R2	        13.117	[I-7] RPMH of (I-6)
R2	        12.930	[I-8] PPM of (I-6)
R2	       906.506	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
3058.5687	3027.9735	302702.7027	5152	0	5152	5152.000	513639	ALL_R1	viral	Lymphocryptovirus	0.0
<<
2994.2780	2951.5689	206930.6523	5022	0	5022	5022.000	500727	ALL_R2	viral	Lymphocryptovirus	0.0
<<
11.2797	11.1668	1116.3337	19	0	19	19.000	1897	R1U	viral	Lymphocryptovirus	n/a	
<<
13.1171	12.9300	906.5062	22	0	22	22.000	2194	R2U	viral	Lymphocryptovirus	n/a