# 2020/04/04 21:17:33
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR243786	Replication ID
# SRP000547	Sample ID
# ERR243786_1.filt	Read1
# ERR243786_2.filt	Read2
R1	        2143862 (100.0000%)	[A] Total raw reads
R1	        2102048 (98.0496%)	[B] Total reads after QC of (A)
R1		
R1	        2102048 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        3867243 (91.9875%)	[B-3] Total mapped reads of (B-2)x2
R1	         336853 (8.0125%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1951212 (92.8243%)	[F] Total mapped reads of (B-2)
R1	         150836 (7.1757%)	[G] Total unmapped reads of (B-2)
R1	          18564 (0.8831%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        2083484 (99.1169%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           3488 (0.1659%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      1674.119	[I-3] RPMH of (I-1)
R1	      1659.334	[I-4] PPM of (I-1)
R1	    187890.541	[I-5] RPMU of (I-1)
R1	              6 (0.0003%)	[I-6] Total chimeric reads of (I-1)
R1	         2.880	[I-7] RPMH of (I-6)
R1	         2.854	[I-8] PPM of (I-6)
R1	       323.206	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        2143862 (100.0000%)	[A] Total raw reads
R2	        2102048 (98.0496%)	[B] Total reads after QC of (A)
R2		
R2	        2102048 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        3867243 (91.9875%)	[B-3] Total mapped reads of (B-2)x2
R2	         336853 (8.0125%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1916031 (91.1507%)	[F] Total mapped reads of (B-2)
R2	         186017 (8.8493%)	[G] Total unmapped reads of (B-2)
R2	          31884 (1.5168%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        2070164 (98.4832%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           3397 (0.1616%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      1640.933	[I-3] RPMH of (I-1)
R2	      1616.043	[I-4] PPM of (I-1)
R2	    106542.466	[I-5] RPMU of (I-1)
R2	              1 (0.0000%)	[I-6] Total chimeric reads of (I-1)
R2	         0.483	[I-7] RPMH of (I-6)
R2	         0.476	[I-8] PPM of (I-6)
R2	        31.364	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
1671.7191	1656.9555	187621.2023	3483	0	3483	3483.000	347327	ALL_R1	viral	Lymphocryptovirus	0.0
<<
1638.5175	1613.6644	106385.6480	3392	0	3392	3392.000	338081	ALL_R2	viral	Lymphocryptovirus	0.0
<<
2.8798	2.8544	323.2062	6	0	6	6.000	598	R1U	viral	Lymphocryptovirus	n/a	
<<
0.4831	0.4757	31.3637	1	0	1	1.000	100	R2U	viral	Lymphocryptovirus	n/a