# 2020/04/04 12:05:32
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR243639	Replication ID
# SRP000547	Sample ID
# ERR243639_1.filt	Read1
# ERR243639_2.filt	Read2
R1	        2368648 (100.0000%)	[A] Total raw reads
R1	        2324303 (98.1278%)	[B] Total reads after QC of (A)
R1		
R1	        2324303 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        4274240 (91.9467%)	[B-3] Total mapped reads of (B-2)x2
R1	         374366 (8.0533%)	[B-4] Total unmapped reads of (B-2)x2
R1	        2156719 (92.7899%)	[F] Total mapped reads of (B-2)
R1	         167584 (7.2101%)	[G] Total unmapped reads of (B-2)
R1	          20677 (0.8896%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        2303626 (99.1104%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           3994 (0.1718%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      1733.788	[I-3] RPMH of (I-1)
R1	      1718.365	[I-4] PPM of (I-1)
R1	    193161.484	[I-5] RPMU of (I-1)
R1	              4 (0.0002%)	[I-6] Total chimeric reads of (I-1)
R1	         1.736	[I-7] RPMH of (I-6)
R1	         1.721	[I-8] PPM of (I-6)
R1	       193.452	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        2368648 (100.0000%)	[A] Total raw reads
R2	        2324303 (98.1278%)	[B] Total reads after QC of (A)
R2		
R2	        2324303 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        4274240 (91.9467%)	[B-3] Total mapped reads of (B-2)x2
R2	         374366 (8.0533%)	[B-4] Total unmapped reads of (B-2)x2
R2	        2117521 (91.1035%)	[F] Total mapped reads of (B-2)
R2	         206782 (8.8965%)	[G] Total unmapped reads of (B-2)
R2	          36508 (1.5707%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        2287795 (98.4293%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           3878 (0.1668%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      1695.082	[I-3] RPMH of (I-1)
R2	      1668.457	[I-4] PPM of (I-1)
R2	    106223.294	[I-5] RPMU of (I-1)
R2	              4 (0.0002%)	[I-6] Total chimeric reads of (I-1)
R2	         1.748	[I-7] RPMH of (I-6)
R2	         1.721	[I-8] PPM of (I-6)
R2	       109.565	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
1732.9202	1717.5041	193064.7579	3992	0	3992	3992.000	397852	ALL_R1	viral	Lymphocryptovirus	0.0
<<
1694.2077	1667.5967	106168.5110	3876	0	3876	3876.000	385895	ALL_R2	viral	Lymphocryptovirus	0.0
<<
1.7364	1.7209	193.4517	4	0	4	4.000	400	R1U	viral	Lymphocryptovirus	n/a	
<<
1.7484	1.7209	109.5650	4	0	4	4.000	397	R2U	viral	Lymphocryptovirus	n/a