# 2020/04/04 09:47:04
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR243534	Replication ID
# SRP000547	Sample ID
# ERR243534_1.filt	Read1
# ERR243534_2.filt	Read2
R1	        1953039 (100.0000%)	[A] Total raw reads
R1	        1913783 (97.9900%)	[B] Total reads after QC of (A)
R1		
R1	        1913783 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        3541338 (92.5219%)	[B-3] Total mapped reads of (B-2)x2
R1	         286228 (7.4781%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1782311 (93.1303%)	[F] Total mapped reads of (B-2)
R1	         131472 (6.8697%)	[G] Total unmapped reads of (B-2)
R1	          16659 (0.8705%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        1897124 (99.1295%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           3318 (0.1734%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      1748.963	[I-3] RPMH of (I-1)
R1	      1733.739	[I-4] PPM of (I-1)
R1	    199171.619	[I-5] RPMU of (I-1)
R1	              9 (0.0005%)	[I-6] Total chimeric reads of (I-1)
R1	         4.744	[I-7] RPMH of (I-6)
R1	         4.703	[I-8] PPM of (I-6)
R1	       540.248	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        1953039 (100.0000%)	[A] Total raw reads
R2	        1913783 (97.9900%)	[B] Total reads after QC of (A)
R2		
R2	        1913783 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        3541338 (92.5219%)	[B-3] Total mapped reads of (B-2)x2
R2	         286228 (7.4781%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1759027 (91.9136%)	[F] Total mapped reads of (B-2)
R2	         154756 (8.0864%)	[G] Total unmapped reads of (B-2)
R2	          25638 (1.3397%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1888145 (98.6603%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           3256 (0.1701%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      1724.444	[I-3] RPMH of (I-1)
R2	      1701.342	[I-4] PPM of (I-1)
R2	    126998.986	[I-5] RPMU of (I-1)
R2	              4 (0.0002%)	[I-6] Total chimeric reads of (I-1)
R2	         2.119	[I-7] RPMH of (I-6)
R2	         2.090	[I-8] PPM of (I-6)
R2	       156.018	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
1745.8005	1730.6037	198811.4533	3312	0	3312	3312.000	330915	ALL_R1	viral	Lymphocryptovirus	0.0
<<
1722.3254	1699.2522	126842.9675	3252	0	3252	3252.000	324787	ALL_R2	viral	Lymphocryptovirus	0.0
<<
4.7440	4.7027	540.2485	9	0	9	9.000	898	R1U	viral	Lymphocryptovirus	n/a	
<<
1.5889	1.5676	117.0138	3	0	3	3.000	299	R2U	viral	Lymphocryptovirus	n/a	
0.5296	0.5225	39.0046	1	0	1	1.000	99	R2U	viral	Phix174microvirus	n/a