# 2020/03/31 02:00:03
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR243401	Replication ID
# SRP000547	Sample ID
# ERR243401_1.filt	Read1
# ERR243401_2.filt	Read2
R1	        1840233 (100.0000%)	[A] Total raw reads
R1	        1803123 (97.9834%)	[B] Total reads after QC of (A)
R1		
R1	        1803123 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        3337990 (92.5614%)	[B-3] Total mapped reads of (B-2)x2
R1	         268256 (7.4386%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1678418 (93.0839%)	[F] Total mapped reads of (B-2)
R1	         124705 (6.9161%)	[G] Total unmapped reads of (B-2)
R1	          17688 (0.9810%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        1785435 (99.0190%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           5435 (0.3014%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      3044.076	[I-3] RPMH of (I-1)
R1	      3014.215	[I-4] PPM of (I-1)
R1	    307270.466	[I-5] RPMU of (I-1)
R1	             19 (0.0011%)	[I-6] Total chimeric reads of (I-1)
R1	        10.642	[I-7] RPMH of (I-6)
R1	        10.537	[I-8] PPM of (I-6)
R1	      1074.175	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        1840233 (100.0000%)	[A] Total raw reads
R2	        1803123 (97.9834%)	[B] Total reads after QC of (A)
R2		
R2	        1803123 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        3337990 (92.5614%)	[B-3] Total mapped reads of (B-2)x2
R2	         268256 (7.4386%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1659572 (92.0388%)	[F] Total mapped reads of (B-2)
R2	         143551 (7.9612%)	[G] Total unmapped reads of (B-2)
R2	          25365 (1.4067%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1777758 (98.5933%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           5332 (0.2957%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      2999.283	[I-3] RPMH of (I-1)
R2	      2957.092	[I-4] PPM of (I-1)
R2	    210210.921	[I-5] RPMU of (I-1)
R2	             10 (0.0006%)	[I-6] Total chimeric reads of (I-1)
R2	         5.625	[I-7] RPMH of (I-6)
R2	         5.546	[I-8] PPM of (I-6)
R2	       394.244	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
3044.0761	3014.2148	307270.4659	5435	0	5435	5435.000	541791	ALL_R1	viral	Lymphocryptovirus	0.0
<<
2997.5958	2955.4279	210092.6473	5329	0	5329	5329.000	531119	ALL_R2	viral	Lymphocryptovirus	0.0
<<
10.6417	10.5373	1074.1746	19	0	19	19.000	1900	R1U	viral	Lymphocryptovirus	n/a	
<<
5.0626	4.9913	354.8196	9	0	9	9.000	896	R2U	viral	Lymphocryptovirus	n/a	
0.5625	0.5546	39.4244	1	0	1	1.000	100	R2U	viral	Phix174microvirus	n/a