# 2020/04/06 11:58:05
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR243332	Replication ID
# SRP000547	Sample ID
# ERR243332_1.filt	Read1
# ERR243332_2.filt	Read2
R1	        1833907 (100.0000%)	[A] Total raw reads
R1	        1800308 (98.1679%)	[B] Total reads after QC of (A)
R1		
R1	        1800308 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        3305579 (91.8059%)	[B-3] Total mapped reads of (B-2)x2
R1	         295037 (8.1941%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1662305 (92.3345%)	[F] Total mapped reads of (B-2)
R1	         138003 (7.6655%)	[G] Total unmapped reads of (B-2)
R1	          24520 (1.3620%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        1775788 (98.6380%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	          10513 (0.5840%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      5920.189	[I-3] RPMH of (I-1)
R1	      5839.556	[I-4] PPM of (I-1)
R1	    428752.039	[I-5] RPMU of (I-1)
R1	             18 (0.0010%)	[I-6] Total chimeric reads of (I-1)
R1	        10.136	[I-7] RPMH of (I-6)
R1	         9.998	[I-8] PPM of (I-6)
R1	       734.095	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        1833907 (100.0000%)	[A] Total raw reads
R2	        1800308 (98.1679%)	[B] Total reads after QC of (A)
R2		
R2	        1800308 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        3305579 (91.8059%)	[B-3] Total mapped reads of (B-2)x2
R2	         295037 (8.1941%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1643274 (91.2774%)	[F] Total mapped reads of (B-2)
R2	         157034 (8.7226%)	[G] Total unmapped reads of (B-2)
R2	          31578 (1.7540%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1768730 (98.2460%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	          10401 (0.5777%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      5880.490	[I-3] RPMH of (I-1)
R2	      5777.345	[I-4] PPM of (I-1)
R2	    329374.881	[I-5] RPMU of (I-1)
R2	             17 (0.0009%)	[I-6] Total chimeric reads of (I-1)
R2	         9.611	[I-7] RPMH of (I-6)
R2	         9.443	[I-8] PPM of (I-6)
R2	       538.349	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
5918.4993	5837.8900	428629.6900	10510	0	10510	10510.000	1048429	ALL_R1	viral	Lymphocryptovirus	0.0
<<
5878.2290	5775.1229	329248.2108	10397	0	10397	10397.000	1036262	ALL_R2	viral	Lymphocryptovirus	0.0
<<
10.1363	9.9983	734.0946	18	0	18	18.000	1797	R1U	viral	Lymphocryptovirus	n/a	
<<
9.6114	9.4428	538.3495	17	0	17	17.000	1699	R2U	viral	Lymphocryptovirus	n/a