# 2020/04/04 02:22:33
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR243170	Replication ID
# SRP000547	Sample ID
# ERR243170_1.filt	Read1
# ERR243170_2.filt	Read2
R1	        2181942 (100.0000%)	[A] Total raw reads
R1	        2142305 (98.1834%)	[B] Total reads after QC of (A)
R1		
R1	        2142305 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        3956578 (92.3439%)	[B-3] Total mapped reads of (B-2)x2
R1	         328032 (7.6561%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1991008 (92.9377%)	[F] Total mapped reads of (B-2)
R1	         151297 (7.0623%)	[G] Total unmapped reads of (B-2)
R1	          18515 (0.8643%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        2123790 (99.1357%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           3649 (0.1703%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      1718.155	[I-3] RPMH of (I-1)
R1	      1703.306	[I-4] PPM of (I-1)
R1	    197083.446	[I-5] RPMU of (I-1)
R1	             10 (0.0005%)	[I-6] Total chimeric reads of (I-1)
R1	         4.709	[I-7] RPMH of (I-6)
R1	         4.668	[I-8] PPM of (I-6)
R1	       540.103	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        2181942 (100.0000%)	[A] Total raw reads
R2	        2142305 (98.1834%)	[B] Total reads after QC of (A)
R2		
R2	        2142305 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        3956578 (92.3439%)	[B-3] Total mapped reads of (B-2)x2
R2	         328032 (7.6561%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1965570 (91.7502%)	[F] Total mapped reads of (B-2)
R2	         176735 (8.2498%)	[G] Total unmapped reads of (B-2)
R2	          28428 (1.3270%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        2113877 (98.6730%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           3584 (0.1673%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      1695.463	[I-3] RPMH of (I-1)
R2	      1672.964	[I-4] PPM of (I-1)
R2	    126072.886	[I-5] RPMU of (I-1)
R2	              2 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R2	         0.946	[I-7] RPMH of (I-6)
R2	         0.934	[I-8] PPM of (I-6)
R2	        70.353	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
1714.8588	1700.0380	196705.3740	3642	0	3642	3642.000	363160	ALL_R1	viral	Lymphocryptovirus	0.0
<<
1691.6784	1669.2301	125791.4732	3576	0	3576	3576.000	356368	ALL_R2	viral	Lymphocryptovirus	0.0
<<
4.7086	4.6679	540.1026	10	0	10	10.000	999	R1U	viral	Lymphocryptovirus	n/a	
<<
0.9461	0.9336	70.3532	2	0	2	2.000	200	R2U	viral	Lymphocryptovirus	n/a