# 2020/04/04 00:26:40 # HUMAN Target (Host) organism # RNA Sequencing source # ERR204889 Replication ID # ERR204889 Sample ID # ERR204889_1 Read1 # ERR204889_2 Read2 R1 16264830 (100.0000%) [A] Total raw reads R1 15795561 (97.1148%) [B] Total reads after QC of (A) R1 R1 15795561 (100.0000%) [B-2] Total reads of (B) passed to HISAT2 R1 28142613 (89.0839%) [B-3] Total mapped reads of (B-2)x2 R1 3448509 (10.9161%) [B-4] Total unmapped reads of (B-2)x2 R1 14117102 (89.3739%) [F] Total mapped reads of (B-2) R1 1678459 (10.6261%) [G] Total unmapped reads of (B-2) R1 56822 (0.3597%) [H] Total unmapped reads of (B-2) after running BLASTn with (G) R1 15738739 (99.6403%) [J] Total mapped reads to host genome ( (B-2)-H) R1 28379 (0.1797%) [I-1] Total mapped reads of (H) to exo. genomes R1 1803.130 [I-3] RPMH of (I-1) R1 1796.644 [I-4] PPM of (I-1) R1 499436.838 [I-5] RPMU of (I-1) R1 87 (0.0006%) [I-6] Total chimeric reads of (I-1) R1 5.528 [I-7] RPMH of (I-6) R1 5.508 [I-8] PPM of (I-6) R1 1531.097 [I-9] RPMU of (I-6) R1 ## ----------------------------------------- R2 16264830 (100.0000%) [A] Total raw reads R2 15795561 (97.1148%) [B] Total reads after QC of (A) R2 R2 15795561 (100.0000%) [B-2] Total reads of (B) passed to HISAT2 R2 28142613 (89.0839%) [B-3] Total mapped reads of (B-2)x2 R2 3448509 (10.9161%) [B-4] Total unmapped reads of (B-2)x2 R2 14025511 (88.7940%) [F] Total mapped reads of (B-2) R2 1770050 (11.2060%) [G] Total unmapped reads of (B-2) R2 96717 (0.6123%) [H] Total unmapped reads of (B-2) after running BLASTn with (G) R2 15698844 (99.3877%) [J] Total mapped reads to host genome ( (B-2)-H) R2 28107 (0.1779%) [I-1] Total mapped reads of (H) to exo. genomes R2 1790.387 [I-3] RPMH of (I-1) R2 1779.424 [I-4] PPM of (I-1) R2 290610.751 [I-5] RPMU of (I-1) R2 89 (0.0006%) [I-6] Total chimeric reads of (I-1) R2 5.669 [I-7] RPMH of (I-6) R2 5.634 [I-8] PPM of (I-6) R2 920.211 [I-9] RPMU of (I-6) R2 ## ----------------------------------------- ##=============================================## # List threshold of RPMU > 1 # List threshold of P-value < 0.001 # RPMH PPM RPMU Total Multi_Reads(All_ExoGenus) Uniq_Reads(This_Genus) wTotal Sum_ReadLength Type Exo Genus Pvalue(Uniq) 359.9363 358.6415 99696.2972 6374 1362 5012 5664.943 471697 ALL_R1 bacteria Nocardia 0.0 7.4231 7.3964 2056.0698 234 119 115 116.830 17224 ALL_R1 bacteria Bradyrhizobium 5.46e-47 4.1113 4.0965 1138.7667 120 56 64 64.707 8828 ALL_R1 bacteria Escherichia 2.54e-20 << 1243.3016 1238.8291 344373.6581 19568 0 19568 19568.000 1438976 ALL_R1 viral Lymphocryptovirus 0.0 << 359.8453 357.6419 58409.1215 6352 1394 4958 5649.155 462443 ALL_R2 bacteria Nocardia 0.0 7.0724 7.0291 1147.9781 222 116 106 111.029 16148 ALL_R2 bacteria Bradyrhizobium 3.24e-40 << 1230.1543 1222.6220 199675.3415 19312 0 19312 19312.000 1404349 ALL_R2 viral Lymphocryptovirus 0.0 << 0.2854 0.2844 79.0539 5 1 4 4.492 348 R1U bacteria Nocardia n/a << 0.0635 0.0633 17.5988 1 0 1 1.000 55 R1U fungi Parastagonospora n/a 0.0635 0.0633 17.5988 1 0 1 1.000 53 R1U fungi Botrytis n/a 0.0635 0.0633 17.5988 1 0 1 1.000 48 R1U fungi Coccidioides n/a 0.0635 0.0633 17.5988 1 0 1 1.000 46 R1U fungi Coniosporium n/a << 2.6686 2.6590 739.1503 42 0 42 42.000 3041 R1U viral Lymphocryptovirus n/a << 0.5260 0.5228 85.3831 9 1 8 8.258 604 R2U bacteria Nocardia n/a 0.2548 0.2532 41.3578 4 0 4 4.000 299 R2U bacteria Lachnoclostridium n/a 0.1296 0.1288 21.0304 3 1 2 2.034 163 R2U bacteria Paenibacillus n/a 0.0637 0.0633 10.3394 1 0 1 1.000 72 R2U bacteria Loktanella n/a 0.0637 0.0633 10.3394 1 0 1 1.000 54 R2U bacteria Roseobacter n/a << 0.1564 0.1555 25.3937 5 3 2 2.456 273 R2U fungi Trichoderma n/a 0.1274 0.1266 20.6789 2 0 2 2.000 97 R2U fungi Marssonina n/a 0.1274 0.1266 20.6789 2 0 2 2.000 101 R2U fungi Schizosaccharomyces n/a 0.0961 0.0955 15.5919 2 1 1 1.508 97 R2U fungi Kluyveromyces n/a 0.0961 0.0955 15.5919 2 1 1 1.508 114 R2U fungi Aureobasidium n/a 0.0720 0.0716 11.6939 2 1 1 1.131 127 R2U fungi Penicillium n/a 0.0720 0.0716 11.6939 2 1 1 1.131 107 R2U fungi Isaria n/a 0.0680 0.0676 11.0322 2 1 1 1.067 110 R2U fungi Leptosphaeria n/a 0.0637 0.0633 10.3394 1 0 1 1.000 63 R2U fungi Trametes n/a 0.0637 0.0633 10.3394 1 0 1 1.000 55 R2U fungi Coniosporium n/a 0.0637 0.0633 10.3394 1 0 1 1.000 51 R2U fungi Lodderomyces n/a 0.0637 0.0633 10.3394 1 0 1 1.000 46 R2U fungi Ustilago n/a 0.0637 0.0633 10.3394 1 0 1 1.000 42 R2U fungi Encephalitozoon n/a 0.0637 0.0633 10.3394 1 0 1 1.000 40 R2U fungi Cutaneotrichosporon n/a 0.0637 0.0633 10.3394 1 0 1 1.000 37 R2U fungi Pseudogymnoascus n/a << 2.8028 2.7856 454.9355 44 0 44 44.000 3108 R2U viral Lymphocryptovirus n/a 0.0637 0.0633 10.3394 1 0 1 1.000 37 R2U viral Alpharetrovirus n/a