# 2020/03/31 23:15:35
# HUMAN	Target (Host) organism
# RNA	Sequencing source
# ERR204839	Replication ID
# ERR204839	Sample ID
# ERR204839_1	Read1
# ERR204839_2	Read2
R1	       12900609 (100.0000%)	[A] Total raw reads
R1	       12453026 (96.5305%)	[B] Total reads after QC of (A)
R1		
R1	       12453026 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	       21741070 (87.2923%)	[B-3] Total mapped reads of (B-2)x2
R1	        3164982 (12.7077%)	[B-4] Total unmapped reads of (B-2)x2
R1	       10890408 (87.4519%)	[F] Total mapped reads of (B-2)
R1	        1562618 (12.5481%)	[G] Total unmapped reads of (B-2)
R1	          75454 (0.6059%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	       12377572 (99.3941%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	          53257 (0.4277%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      4302.702	[I-3] RPMH of (I-1)
R1	      4276.631	[I-4] PPM of (I-1)
R1	    705820.765	[I-5] RPMU of (I-1)
R1	            185 (0.0015%)	[I-6] Total chimeric reads of (I-1)
R1	        14.946	[I-7] RPMH of (I-6)
R1	        14.856	[I-8] PPM of (I-6)
R1	      2451.825	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	       12900609 (100.0000%)	[A] Total raw reads
R2	       12453026 (96.5305%)	[B] Total reads after QC of (A)
R2		
R2	       12453026 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	       21741070 (87.2923%)	[B-3] Total mapped reads of (B-2)x2
R2	        3164982 (12.7077%)	[B-4] Total unmapped reads of (B-2)x2
R2	       10850662 (87.1327%)	[F] Total mapped reads of (B-2)
R2	        1602364 (12.8673%)	[G] Total unmapped reads of (B-2)
R2	          95880 (0.7699%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	       12357146 (99.2301%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	          53000 (0.4256%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      4289.016	[I-3] RPMH of (I-1)
R2	      4255.994	[I-4] PPM of (I-1)
R2	    552774.301	[I-5] RPMU of (I-1)
R2	            190 (0.0015%)	[I-6] Total chimeric reads of (I-1)
R2	        15.376	[I-7] RPMH of (I-6)
R2	        15.257	[I-8] PPM of (I-6)
R2	      1981.644	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
343.2139	341.1344	56301.2564	5035	1422	3613	4248.155	373698	ALL_R1	bacteria	Nocardia	0.0
<<
3689.6574	3667.3014	605256.1826	45669	0	45669	45669.000	3352130	ALL_R1	viral	Lymphocryptovirus	0.0
<<
271.6437	269.5522	35009.8144	5009	2970	2039	3356.741	366263	ALL_R2	bacteria	Nocardia	0.0
5.5654	5.5225	717.2716	84	20	64	68.772	6101	ALL_R2	bacteria	Escherichia	5.89e-09
<<
3672.4499	3644.1745	473310.3880	45381	0	45381	45381.000	3289675	ALL_R2	viral	Lymphocryptovirus	0.0
<<
0.4765	0.4736	78.1668	7	2	5	5.898	511	R1U	bacteria	Nocardia	n/a	
0.1284	0.1276	21.0592	35	34	1	1.589	2358	R1U	bacteria	Mycobacterium	n/a	
<<
0.0808	0.0803	13.2531	1	0	1	1.000	75	R1U	fungi	Tuber	n/a	
0.0808	0.0803	13.2531	1	0	1	1.000	57	R1U	fungi	Pseudogymnoascus	n/a	
0.0808	0.0803	13.2531	1	0	1	1.000	44	R1U	fungi	Endocarpon	n/a	
0.0808	0.0803	13.2531	1	0	1	1.000	38	R1U	fungi	Nosema	n/a	
<<
11.0684	11.0013	1815.6758	137	0	137	137.000	9971	R1U	viral	Lymphocryptovirus	n/a	
0.0808	0.0803	13.2531	1	0	1	1.000	75	R1U	viral	Betaretrovirus	n/a	
<<
0.3507	0.3480	45.2023	6	3	3	4.334	449	R2U	bacteria	Nocardia	n/a	
0.1889	0.1874	24.3429	4	3	1	2.334	279	R2U	bacteria	Spirochaeta	n/a	
0.1618	0.1606	20.8594	2	0	2	2.000	113	R2U	bacteria	Streptomyces	n/a	
0.0872	0.0866	11.2432	3	2	1	1.078	172	R2U	bacteria	Mycobacterium	n/a	
<<
0.2430	0.2411	31.3204	5	2	3	3.003	288	R2U	fungi	Schizosaccharomyces	n/a	
0.2428	0.2409	31.2891	4	1	3	3.000	240	R2U	fungi	Tuber	n/a	
0.1618	0.1606	20.8594	3	1	2	2.000	154	R2U	fungi	Pneumocystis	n/a	
0.1169	0.1160	15.0709	3	2	1	1.445	150	R2U	fungi	Leptosphaeria	n/a	
0.0812	0.0805	10.4610	3	2	1	1.003	223	R2U	fungi	Lodderomyces	n/a	
0.0809	0.0803	10.4297	2	1	1	1.000	149	R2U	fungi	Microsporum	n/a	
0.0809	0.0803	10.4297	2	1	1	1.000	142	R2U	fungi	Paracoccidioides	n/a	
0.0809	0.0803	10.4297	2	1	1	1.000	141	R2U	fungi	Batrachochytrium	n/a	
0.0809	0.0803	10.4297	2	1	1	1.000	119	R2U	fungi	Fomitiporia	n/a	
0.0809	0.0803	10.4297	2	1	1	1.000	113	R2U	fungi	Histoplasma	n/a	
0.0809	0.0803	10.4297	1	0	1	1.000	75	R2U	fungi	Sordaria	n/a	
0.0809	0.0803	10.4297	1	0	1	1.000	75	R2U	fungi	Nosema	n/a	
0.0809	0.0803	10.4297	1	0	1	1.000	37	R2U	fungi	Ustilago	n/a	
0.0809	0.0803	10.4297	1	0	1	1.000	36	R2U	fungi	Wallemia	n/a	
<<
11.9769	11.8847	1543.5962	148	0	148	148.000	10591	R2U	viral	Lymphocryptovirus	n/a