# 2020/03/28 23:12:34
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# SRR035312	Replication ID
# SRP000547	Sample ID
# SRR035312_1.filt	Read1
# SRR035312_2.filt	Read2
R1	       24553936 (100.0000%)	[A] Total raw reads
R1	       18792389 (76.5351%)	[B] Total reads after QC of (A)
R1		
R1	       18792389 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	       34578941 (92.0025%)	[B-3] Total mapped reads of (B-2)x2
R1	        3005837 (7.9975%)	[B-4] Total unmapped reads of (B-2)x2
R1	       17299363 (92.0552%)	[F] Total mapped reads of (B-2)
R1	        1493026 (7.9448%)	[G] Total unmapped reads of (B-2)
R1	         157804 (0.8397%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	       18634585 (99.1603%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	          13759 (0.0732%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	       738.358	[I-3] RPMH of (I-1)
R1	       732.158	[I-4] PPM of (I-1)
R1	     87190.439	[I-5] RPMU of (I-1)
R1	            140 (0.0007%)	[I-6] Total chimeric reads of (I-1)
R1	         7.513	[I-7] RPMH of (I-6)
R1	         7.450	[I-8] PPM of (I-6)
R1	       887.176	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	       24553936 (100.0000%)	[A] Total raw reads
R2	       18792389 (76.5351%)	[B] Total reads after QC of (A)
R2		
R2	       18792389 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	       34578941 (92.0025%)	[B-3] Total mapped reads of (B-2)x2
R2	        3005837 (7.9975%)	[B-4] Total unmapped reads of (B-2)x2
R2	       17279578 (91.9499%)	[F] Total mapped reads of (B-2)
R2	        1512811 (8.0501%)	[G] Total unmapped reads of (B-2)
R2	         154793 (0.8237%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	       18637596 (99.1763%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	          13652 (0.0726%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       732.498	[I-3] RPMH of (I-1)
R2	       726.464	[I-4] PPM of (I-1)
R2	     88195.203	[I-5] RPMU of (I-1)
R2	             94 (0.0005%)	[I-6] Total chimeric reads of (I-1)
R2	         5.044	[I-7] RPMH of (I-6)
R2	         5.002	[I-8] PPM of (I-6)
R2	       607.263	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
3.3258	3.2978	392.7277	116	86	30	61.974	7824	ALL_R1	bacteria	Campylobacter	1.23e-29
3.2907	3.2630	388.5833	121	95	26	61.320	8052	ALL_R1	bacteria	Eubacterium	2.21e-06
2.6460	2.6238	312.4572	87	60	27	49.307	5458	ALL_R1	bacteria	Alcanivorax	4.40e-24
<<
724.9424	718.8549	85606.1950	13509	0	13509	13509.000	940003	ALL_R1	viral	Lymphocryptovirus	0.0
<<
1.7274	1.7132	207.9874	101	80	21	32.195	7033	ALL_R2	bacteria	Eubacterium	2.60e-04
1.5408	1.5281	185.5187	50	34	16	28.717	3356	ALL_R2	bacteria	Alcanivorax	5.71e-08
<<
721.9815	716.0346	86928.9955	13456	0	13456	13456.000	941681	ALL_R2	viral	Lymphocryptovirus	0.0
<<
0.1810	0.1794	21.3683	4	1	3	3.372	292	R1U	bacteria	Campylobacter	n/a	
0.0936	0.0928	11.0517	3	2	1	1.744	194	R1U	bacteria	Alcanivorax	n/a	
<<
7.0836	7.0241	836.4807	132	0	132	132.000	9222	R1U	viral	Lymphocryptovirus	n/a	
<<
0.1540	0.1527	18.5409	6	5	1	2.870	368	R2U	bacteria	Alcanivorax	n/a	
0.0537	0.0532	6.4602	1	0	1	1.000	59	R2U	bacteria	Gemmata	n/a	
<<
4.6680	4.6295	562.0409	87	0	87	87.000	6110	R2U	viral	Lymphocryptovirus	n/a