# 2020/03/29 10:44:36
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR243476	Replication ID
# SRP000547	Sample ID
# ERR243476_1.filt	Read1
# ERR243476_2.filt	Read2
R1	        2021063 (100.0000%)	[A] Total raw reads
R1	        1974923 (97.7170%)	[B] Total reads after QC of (A)
R1		
R1	        1974923 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        3641724 (92.1991%)	[B-3] Total mapped reads of (B-2)x2
R1	         308122 (7.8009%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1836585 (92.9953%)	[F] Total mapped reads of (B-2)
R1	         138338 (7.0047%)	[G] Total unmapped reads of (B-2)
R1	          17298 (0.8759%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        1957625 (99.1241%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           4354 (0.2205%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      2224.124	[I-3] RPMH of (I-1)
R1	      2204.643	[I-4] PPM of (I-1)
R1	    251705.400	[I-5] RPMU of (I-1)
R1	              5 (0.0003%)	[I-6] Total chimeric reads of (I-1)
R1	         2.554	[I-7] RPMH of (I-6)
R1	         2.532	[I-8] PPM of (I-6)
R1	       289.051	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        2021063 (100.0000%)	[A] Total raw reads
R2	        1974923 (97.7170%)	[B] Total reads after QC of (A)
R2		
R2	        1974923 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        3641724 (92.1991%)	[B-3] Total mapped reads of (B-2)x2
R2	         308122 (7.8009%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1805139 (91.4030%)	[F] Total mapped reads of (B-2)
R2	         169784 (8.5970%)	[G] Total unmapped reads of (B-2)
R2	          29798 (1.5088%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1945125 (98.4912%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           4294 (0.2174%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      2207.570	[I-3] RPMH of (I-1)
R2	      2174.262	[I-4] PPM of (I-1)
R2	    144103.631	[I-5] RPMU of (I-1)
R2	             11 (0.0006%)	[I-6] Total chimeric reads of (I-1)
R2	         5.655	[I-7] RPMH of (I-6)
R2	         5.570	[I-8] PPM of (I-6)
R2	       369.152	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
2223.6128	2204.1366	251647.5893	4353	0	4353	4353.000	434290	ALL_R1	viral	Lymphocryptovirus	0.0
<<
2206.5420	2173.2493	144036.5125	4292	0	4292	4292.000	427647	ALL_R2	viral	Lymphocryptovirus	0.0
<<
2.5541	2.5317	289.0508	5	0	5	5.000	500	R1U	viral	Lymphocryptovirus	n/a	
<<
5.1411	5.0635	335.5930	10	0	10	10.000	999	R2U	viral	Lymphocryptovirus	n/a	
0.5141	0.5063	33.5593	1	0	1	1.000	100	R2U	viral	Phix174microvirus	n/a