# 2020/03/29 05:04:04
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR243133	Replication ID
# SRP000547	Sample ID
# ERR243133_1.filt	Read1
# ERR243133_2.filt	Read2
R1	        1930525 (100.0000%)	[A] Total raw reads
R1	        1889157 (97.8572%)	[B] Total reads after QC of (A)
R1		
R1	        1889157 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        3485409 (92.2477%)	[B-3] Total mapped reads of (B-2)x2
R1	         292905 (7.7523%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1754097 (92.8508%)	[F] Total mapped reads of (B-2)
R1	         135060 (7.1492%)	[G] Total unmapped reads of (B-2)
R1	          17010 (0.9004%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        1872147 (99.0996%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           4343 (0.2299%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      2319.796	[I-3] RPMH of (I-1)
R1	      2298.909	[I-4] PPM of (I-1)
R1	    255320.400	[I-5] RPMU of (I-1)
R1	              8 (0.0004%)	[I-6] Total chimeric reads of (I-1)
R1	         4.273	[I-7] RPMH of (I-6)
R1	         4.235	[I-8] PPM of (I-6)
R1	       470.312	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        1930525 (100.0000%)	[A] Total raw reads
R2	        1889157 (97.8572%)	[B] Total reads after QC of (A)
R2		
R2	        1889157 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        3485409 (92.2477%)	[B-3] Total mapped reads of (B-2)x2
R2	         292905 (7.7523%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1731312 (91.6447%)	[F] Total mapped reads of (B-2)
R2	         157845 (8.3553%)	[G] Total unmapped reads of (B-2)
R2	          26080 (1.3805%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1863077 (98.6195%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           4265 (0.2258%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      2289.224	[I-3] RPMH of (I-1)
R2	      2257.621	[I-4] PPM of (I-1)
R2	    163535.276	[I-5] RPMU of (I-1)
R2	              5 (0.0003%)	[I-6] Total chimeric reads of (I-1)
R2	         2.684	[I-7] RPMH of (I-6)
R2	         2.647	[I-8] PPM of (I-6)
R2	       191.718	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
2318.1940	2297.3210	255144.0329	4340	0	4340	4340.000	432567	ALL_R1	viral	Lymphocryptovirus	0.0
<<
2287.0767	2255.5034	163381.9018	4261	0	4261	4261.000	424556	ALL_R2	viral	Lymphocryptovirus	0.0
<<
4.2732	4.2347	470.3116	8	0	8	8.000	795	R1U	viral	Lymphocryptovirus	n/a	
<<
2.6837	2.6467	191.7178	5	0	5	5.000	495	R2U	viral	Lymphocryptovirus	n/a