# 2020/03/29 04:35:04
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR243104	Replication ID
# SRP000547	Sample ID
# ERR243104_1.filt	Read1
# ERR243104_2.filt	Read2
R1	        1823139 (100.0000%)	[A] Total raw reads
R1	        1781250 (97.7024%)	[B] Total reads after QC of (A)
R1		
R1	        1781250 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        3292900 (92.4323%)	[B-3] Total mapped reads of (B-2)x2
R1	         269600 (7.5677%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1655962 (92.9663%)	[F] Total mapped reads of (B-2)
R1	         125288 (7.0337%)	[G] Total unmapped reads of (B-2)
R1	          15639 (0.8780%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        1765611 (99.1220%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           4066 (0.2283%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      2302.885	[I-3] RPMH of (I-1)
R1	      2282.667	[I-4] PPM of (I-1)
R1	    259991.048	[I-5] RPMU of (I-1)
R1	              6 (0.0003%)	[I-6] Total chimeric reads of (I-1)
R1	         3.398	[I-7] RPMH of (I-6)
R1	         3.368	[I-8] PPM of (I-6)
R1	       383.656	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        1823139 (100.0000%)	[A] Total raw reads
R2	        1781250 (97.7024%)	[B] Total reads after QC of (A)
R2		
R2	        1781250 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        3292900 (92.4323%)	[B-3] Total mapped reads of (B-2)x2
R2	         269600 (7.5677%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1636938 (91.8983%)	[F] Total mapped reads of (B-2)
R2	         144312 (8.1017%)	[G] Total unmapped reads of (B-2)
R2	          23547 (1.3219%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1757703 (98.6781%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           3988 (0.2239%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      2268.870	[I-3] RPMH of (I-1)
R2	      2238.877	[I-4] PPM of (I-1)
R2	    169363.401	[I-5] RPMU of (I-1)
R2	              5 (0.0003%)	[I-6] Total chimeric reads of (I-1)
R2	         2.845	[I-7] RPMH of (I-6)
R2	         2.807	[I-8] PPM of (I-6)
R2	       212.341	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
2301.1864	2280.9825	259799.2199	4063	0	4063	4063.000	404813	ALL_R1	viral	Lymphocryptovirus	0.0
<<
2267.1635	2237.1930	169235.9961	3985	0	3985	3985.000	396896	ALL_R2	viral	Lymphocryptovirus	0.0
<<
3.3983	3.3684	383.6562	6	0	6	6.000	600	R1U	viral	Lymphocryptovirus	n/a	
<<
2.8446	2.8070	212.3413	5	0	5	5.000	494	R2U	viral	Lymphocryptovirus	n/a