# 2018/02/02 01:05:55
# HUMAN	Target (Host) organism
# RNA	Sequencing source
# ENCSR000AFE_2	Replication ID
# ENCSR000AFE	Sample ID
# ENCFF001RPN	Read1
# ENCFF001RPM	Read2
R1	 102321119 (100.0000%)	[A] Total raw reads
R1	  99544442 (97.2863%)	[B] Total reads after QC of (A)
R1		
R1	  99544442 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	 187724064 (94.2916%)	[B-3] Total mapped reads of (B-2)x2
R1	  11364820 (5.7084%)	[B-4] Total unmapped reads of (B-2)x2
R1	  93875285 (94.3049%)	[F] Total mapped reads of (B-2)
R1	   5669157 (5.6951%)	[G] Total unmapped reads of (B-2)
R1	    430965 (0.4329%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	  99113477 (99.5671%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	    187939 (0.1888%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      1896.200	[I-3] RPMH of (I-1)
R1	      1887.991	[I-4] PPM of (I-1)
R1	       176 (0.0002%)	[I-5] Total chimeric reads of (I-1)
R1	         1.776	[I-7] RPMH of (I-5)
R1	         1.768	[I-8] PPM of (I-5)
R1		
## -----------------------------------------

R2	 102321119 (100.0000%)	[A] Total raw reads
R2	  99544442 (97.2863%)	[B] Total reads after QC of (A)
R2		
R2	  99544442 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	 187724064 (94.2916%)	[B-3] Total mapped reads of (B-2)x2
R2	  11364820 (5.7084%)	[B-4] Total unmapped reads of (B-2)x2
R2	  93848779 (94.2783%)	[F] Total mapped reads of (B-2)
R2	   5695663 (5.7217%)	[G] Total unmapped reads of (B-2)
R2	    601224 (0.6040%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	  98943218 (99.3960%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	    184549 (0.1854%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      1865.201	[I-3] RPMH of (I-1)
R2	      1853.936	[I-4] PPM of (I-1)
R2	       130 (0.0001%)	[I-5] Total chimeric reads of (I-1)
R2	         1.314	[I-7] RPMH of (I-5)
R2	         1.306	[I-8] PPM of (I-5)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMH   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
828.2833	824.6973	83862	1865	81997	82094.035	8298520	ALL_R1	bacteria	Bacillus	0.0
19.9026	19.8164	4299	4028	271	1972.615	380732	ALL_R1	bacteria	Escherichia	1.14e-284
1.9830	1.9744	1633	1503	130	196.542	157079	ALL_R1	bacteria	Cutibacterium	2.24e-06
<<
831.3793	826.3580	83680	1509	82171	82259.346	8302127	ALL_R2	bacteria	Bacillus	0.0
1.9675	1.9556	1315	1185	130	194.669	128838	ALL_R2	bacteria	Cutibacterium	8.10e-07
<<
225.7588	224.3953	92966	92965	1	22337.306	8133232	ALL_R2	viral	Phix174microvirus	n/a
13.7285	13.6456	2003	1942	61	1358.346	198438	ALL_R2	viral	Lambdavirus	1.35e-07