#Unique_Reads Genus Species # 20 reads uniquely mapped to Achromobacter (multi-hits among diff. species in Achromobacter allowed) 11 Achromobacter Achromobacter xylosoxidans 4 Achromobacter Achromobacter xylosoxidans A8 2 Achromobacter Achromobacter insolitus 2 Achromobacter Achromobacter xylosoxidans C54 1 Achromobacter Achromobacter sp. DMS1 # 6322 reads uniquely mapped to Acinetobacter (multi-hits among diff. species in Acinetobacter allowed) 6262 Acinetobacter Acinetobacter rudis 20 Acinetobacter Acinetobacter baumannii 11 Acinetobacter Acinetobacter lwoffii NCTC 5866 = CIP 64.10 = NIPH 512 2 Acinetobacter Acinetobacter sp. TGL-Y2 2 Acinetobacter Acinetobacter baumannii 1656-2 2 Acinetobacter Acinetobacter soli 2 Acinetobacter Acinetobacter brisouii CIP 110357 2 Acinetobacter Acinetobacter tandoii DSM 14970 = CIP 107469 2 Acinetobacter Acinetobacter pittii 2 Acinetobacter Acinetobacter johnsonii XBB1 1 Acinetobacter Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 1 Acinetobacter Acinetobacter calcoaceticus 1 Acinetobacter Acinetobacter sp. TTH0-4 1 Acinetobacter Acinetobacter baumannii DU202 1 Acinetobacter Acinetobacter bereziniae LMG 1003 = CIP 70.12 1 Acinetobacter Acinetobacter towneri 1 Acinetobacter Acinetobacter baumannii D1279779 1 Acinetobacter Acinetobacter larvae 1 Acinetobacter Acinetobacter schindleri CIP 107287 1 Acinetobacter Acinetobacter sp. ADP1 1 Acinetobacter NZ_CP015483 1 Acinetobacter NC_011586 1 Acinetobacter Acinetobacter bouvetii DSM 14964 = CIP 107468 1 Acinetobacter Acinetobacter junii 1 Acinetobacter Acinetobacter harbinensis # 124 reads uniquely mapped to Actinomyces (multi-hits among diff. species in Actinomyces allowed) 32 Actinomyces Actinomyces sp. VUL4_3 27 Actinomyces Actinomyces vaccimaxillae DSM 15804 16 Actinomyces Actinomyces radicidentis 12 Actinomyces Actinomyces polynesiensis 7 Actinomyces Actinomyces oris 6 Actinomyces Actinomyces sp. oral taxon 848 str. F0332 4 Actinomyces Actinomyces europaeus ACS-120-V-Col10b 3 Actinomyces Actinomyces slackii ATCC 49928 3 Actinomyces Actinomyces massiliensis 4401292 2 Actinomyces Actinomyces odontolyticus ATCC 17982 2 Actinomyces Actinomyces timonensis DSM 23838 2 Actinomyces Actinomyces sp. Marseille-P2985 2 Actinomyces Actinomyces hongkongensis 2 Actinomyces Actinomyces neuii subsp. neuii DSM 8576 1 Actinomyces Actinomyces urogenitalis DSM 15434 1 Actinomyces Actinomyces turicensis ACS-279-V-Col4 1 Actinomyces Actinomyces johnsonii F0542 1 Actinomyces Actinomyces meyeri # 61 reads uniquely mapped to Afipia (multi-hits among diff. species in Afipia allowed) 32 Afipia Afipia sp. P52-10 7 Afipia Afipia broomeae ATCC 49717 7 Afipia Afipia birgiae 34632 6 Afipia Afipia clevelandensis ATCC 49720 5 Afipia Afipia sp. Root123D2 4 Afipia Afipia felis ATCC 53690 # 61 reads uniquely mapped to Agrobacterium (multi-hits among diff. species in Agrobacterium allowed) 14 Agrobacterium Agrobacterium rhizogenes 10 Agrobacterium Agrobacterium vitis S4 10 Agrobacterium Agrobacterium tumefaciens 7 Agrobacterium Rhizobium larrymoorei ATCC 51759 5 Agrobacterium Agrobacterium fabrum str. C58 4 Agrobacterium Agrobacterium sp. H13-3 3 Agrobacterium Agrobacterium radiobacter K84 3 Agrobacterium Agrobacterium sp. RAC06 2 Agrobacterium Rhizobium rubi NBRC 13261 2 Agrobacterium Agrobacterium albertimagni AOL15 1 Agrobacterium Rhizobium rhizogenes NBRC 13257 # 32 reads uniquely mapped to Altererythrobacter (multi-hits among diff. species in Altererythrobacter allowed) 12 Altererythrobacter Altererythrobacter atlanticus 6 Altererythrobacter Altererythrobacter ishigakiensis 6 Altererythrobacter Altererythrobacter namhicola 4 Altererythrobacter Altererythrobacter dongtanensis 2 Altererythrobacter Altererythrobacter troitsensis 1 Altererythrobacter Altererythrobacter epoxidivorans 1 Altererythrobacter Altererythrobacter sp. Root672 # 37 reads uniquely mapped to Anaerococcus (multi-hits among diff. species in Anaerococcus allowed) 19 Anaerococcus Anaerococcus provenciensis 5 Anaerococcus Anaerococcus prevotii DSM 20548 3 Anaerococcus Anaerococcus hydrogenalis DSM 7454 3 Anaerococcus Anaerococcus lactolyticus ATCC 51172 2 Anaerococcus Anaerococcus mediterraneensis 2 Anaerococcus Anaerococcus obesiensis ph10 1 Anaerococcus Anaerococcus prevotii ACS-065-V-Col13 1 Anaerococcus Anaerococcus tetradius ATCC 35098 1 Anaerococcus Anaerococcus pacaensis 9403502 # 20 reads uniquely mapped to Aquabacterium (multi-hits among diff. species in Aquabacterium allowed) 13 Aquabacterium Aquabacterium parvum 7 Aquabacterium Aquabacterium sp. NJ1 # 123 reads uniquely mapped to Arthrobacter (multi-hits among diff. species in Arthrobacter allowed) 19 Arthrobacter Arthrobacter alpinus 12 Arthrobacter Arthrobacter sp. ZXY-2 10 Arthrobacter Arthrobacter sp. ERGS1:01 9 Arthrobacter Arthrobacter sp. QXT-31 9 Arthrobacter Arthrobacter sp. Rue61a 7 Arthrobacter Arthrobacter sp. PAMC 25486 6 Arthrobacter Arthrobacter sp. FB24 6 Arthrobacter Arthrobacter sp. IHBB 11108 6 Arthrobacter Arthrobacter sp. YC-RL1 5 Arthrobacter Arthrobacter sp. A3 5 Arthrobacter Arthrobacter sp. H14 5 Arthrobacter Arthrobacter sp. U41 4 Arthrobacter Arthrobacter sp. LS16 3 Arthrobacter Arthrobacter sp. ATCC 21022 3 Arthrobacter Arthrobacter sp. L77 2 Arthrobacter Arthrobacter castelli DSM 16402 2 Arthrobacter Arthrobacter sp. Leaf141 2 Arthrobacter Arthrobacter sp. Soil763 2 Arthrobacter Arthrobacter sp. 35W 2 Arthrobacter Arthrobacter sp. Hiyo1 1 Arthrobacter Arthrobacter globiformis NBRC 12137 1 Arthrobacter Arthrobacter crystallopoietes BAB-32 1 Arthrobacter Arthrobacter sp. H20 1 Arthrobacter Arthrobacter sp. Soil782 # 84 reads uniquely mapped to Bacillus (multi-hits among diff. species in Bacillus allowed) 9 Bacillus Bacillus manliponensis 5 Bacillus Bacillus vireti LMG 21834 4 Bacillus Bacillus sp. FJAT-18019 4 Bacillus Bacillus bataviensis LMG 21833 3 Bacillus Bacillus coagulans 3 Bacillus Bacillus subtilis subsp. subtilis 3 Bacillus Bacillus velezensis 3 Bacillus Bacillus weihenstephanensis 3 Bacillus Bacillus anthracis 3 Bacillus Bacillus badius 3 Bacillus Bacillus thuringiensis 2 Bacillus Bacillus azotoformans LMG 9581 2 Bacillus Bacillus thuringiensis HD-771 2 Bacillus Bacillus amyloliquefaciens 2 Bacillus Bacillus sp. FJAT-25496 2 Bacillus Bacillus cereus 1 Bacillus Bacillus subtilis BEST7003 1 Bacillus Bacillus licheniformis 1 Bacillus Bacillus safensis 1 Bacillus Bacillus velezensis NJN-6 1 Bacillus Bacillus velezensis UCMB5033 1 Bacillus Bacillus megaterium NBRC 15308 = ATCC 14581 1 Bacillus Bacillus sp. FJAT-14266 1 Bacillus Bacillus bogoriensis ATCC BAA-922 1 Bacillus Bacillus megaterium DSM 319 1 Bacillus Bacillus subtilis 1 Bacillus Bacillus weihaiensis 1 Bacillus Bacillus coagulans 2-6 1 Bacillus Bacillus sp. FJAT-22090 1 Bacillus Bacillus velezensis TrigoCor1448 1 Bacillus Bacillus methanolicus MGA3 1 Bacillus Bacillus clausii 1 Bacillus Bacillus massilioanorexius AP8 1 Bacillus Bacillus endophyticus 1 Bacillus Bacillus niacini 1 Bacillus Bacillus subtilis BSn5 1 Bacillus Bacillus aurantiacus DSM 18675 1 Bacillus Bacillus velezensis CAU B946 1 Bacillus Bacillus velezensis AS43.3 1 Bacillus Bacillus coagulans 36D1 1 Bacillus Bacillus sp. SDLI1 1 Bacillus Bacillus cereus B4264 1 Bacillus Bacillus massiliogorillae 1 Bacillus Bacillus pseudofirmus OF4 1 Bacillus Bacillus muralis 1 Bacillus Bacillus simplex 1 Bacillus Bacillus akibai JCM 9157 # 29 reads uniquely mapped to Bdellovibrio (multi-hits among diff. species in Bdellovibrio allowed) 12 Bdellovibrio Bdellovibrio exovorus JSS 7 Bdellovibrio Bdellovibrio bacteriovorus HD100 5 Bdellovibrio Bdellovibrio bacteriovorus str. Tiberius 3 Bdellovibrio Bdellovibrio bacteriovorus W 2 Bdellovibrio Bdellovibrio bacteriovorus # 6433 reads uniquely mapped to Brachybacterium (multi-hits among diff. species in Brachybacterium allowed) 6334 Brachybacterium Brachybacterium muris UCD-AY4 34 Brachybacterium Brachybacterium squillarum M-6-3 22 Brachybacterium Brachybacterium sp. P6-10-X1 21 Brachybacterium Brachybacterium faecium DSM 4810 13 Brachybacterium Brachybacterium paraconglomeratum LC44 9 Brachybacterium Brachybacterium phenoliresistens # 43 reads uniquely mapped to Bradyrhizobium (multi-hits among diff. species in Bradyrhizobium allowed) 9 Bradyrhizobium Bradyrhizobium neotropicale 4 Bradyrhizobium Bradyrhizobium japonicum 4 Bradyrhizobium Bradyrhizobium sp. ORS 278 3 Bradyrhizobium Bradyrhizobium oligotrophicum S58 3 Bradyrhizobium Bradyrhizobium sp. LTSP857 2 Bradyrhizobium Bradyrhizobium elkanii USDA 76 2 Bradyrhizobium Bradyrhizobium sp. Tv2a-2 2 Bradyrhizobium Bradyrhizobium japonicum USDA 6 2 Bradyrhizobium Bradyrhizobium sp. BTAi1 2 Bradyrhizobium Bradyrhizobium elkanii WSM2783 2 Bradyrhizobium Bradyrhizobium genosp. SA-4 str. CB756 2 Bradyrhizobium Bradyrhizobium diazoefficiens 1 Bradyrhizobium Bradyrhizobium sp. S23321 1 Bradyrhizobium Bradyrhizobium sp. AS23.2 1 Bradyrhizobium Bradyrhizobium sp. URHD0069 1 Bradyrhizobium Bradyrhizobium diazoefficiens USDA 110 1 Bradyrhizobium Bradyrhizobium sp. 1 Bradyrhizobium Bradyrhizobium sp. CCGE-LA001 # 42 reads uniquely mapped to Brevundimonas (multi-hits among diff. species in Brevundimonas allowed) 6 Brevundimonas Brevundimonas aveniformis DSM 17977 6 Brevundimonas Brevundimonas naejangsanensis 6 Brevundimonas Brevundimonas sp. GW460-12-10-14-LB2 4 Brevundimonas Brevundimonas abyssalis TAR-001 4 Brevundimonas Brevundimonas subvibrioides ATCC 15264 4 Brevundimonas Brevundimonas nasdae 3 Brevundimonas Brevundimonas sp. Leaf363 3 Brevundimonas Brevundimonas sp. LM2 3 Brevundimonas Brevundimonas sp. Root1279 2 Brevundimonas Brevundimonas sp. DS20 1 Brevundimonas Brevundimonas diminuta ATCC 11568 # 33 reads uniquely mapped to Brochothrix (multi-hits among diff. species in Brochothrix allowed) 20 Brochothrix Brochothrix campestris FSL F6-1037 13 Brochothrix Brochothrix thermosphacta DSM 20171 = FSL F6-1036 # 45 reads uniquely mapped to Burkholderia (multi-hits among diff. species in Burkholderia allowed) 21 Burkholderia Candidatus Burkholderia crenata 4 Burkholderia Burkholderia pseudomallei 3 Burkholderia Burkholderia contaminans 2 Burkholderia Burkholderia pyrrocinia 2 Burkholderia Burkholderia glumae LMG 2196 = ATCC 33617 2 Burkholderia Burkholderia cenocepacia 2 Burkholderia Burkholderia plantarii 1 Burkholderia Burkholderia pseudomallei MSHR305 1 Burkholderia Burkholderia lata 1 Burkholderia Burkholderia ubonensis 1 Burkholderia Burkholderia sp. OLGA172 1 Burkholderia Burkholderia cepacia ATCC 25416 1 Burkholderia Burkholderia glumae PG1 1 Burkholderia Burkholderia thailandensis MSMB59 1 Burkholderia Burkholderia sp. CCGE1002 1 Burkholderia Burkholderia glumae BGR1 # 36 reads uniquely mapped to Campylobacter (multi-hits among diff. species in Campylobacter allowed) 22 Campylobacter Campylobacter mucosalis 3 Campylobacter Campylobacter coli 3 Campylobacter Campylobacter jejuni subsp. jejuni PT14 2 Campylobacter Campylobacter ureolyticus RIGS 9880 1 Campylobacter Campylobacter sp. MIT 97-5078 1 Campylobacter Campylobacter upsaliensis DSM 5365 1 Campylobacter Campylobacter sp. RM16704 1 Campylobacter Campylobacter hyointestinalis subsp. lawsonii 1 Campylobacter Campylobacter volucris LMG 24379 1 Campylobacter Campylobacter cuniculorum DSM 23162 = LMG 24588 # 32 reads uniquely mapped to Caulobacter (multi-hits among diff. species in Caulobacter allowed) 16 Caulobacter Caulobacter henricii 10 Caulobacter Caulobacter segnis ATCC 21756 3 Caulobacter Caulobacter sp. K31 1 Caulobacter Caulobacter crescentus CB15 1 Caulobacter Caulobacter crescentus NA1000 1 Caulobacter Caulobacter vibrioides # 119 reads uniquely mapped to Clavibacter (multi-hits among diff. species in Clavibacter allowed) 50 Clavibacter Clavibacter michiganensis subsp. sepedonicus 22 Clavibacter Clavibacter michiganensis subsp. nebraskensis NCPPB 2581 21 Clavibacter Clavibacter michiganensis subsp. capsici 17 Clavibacter Clavibacter michiganensis subsp. michiganensis NCPPB 382 9 Clavibacter Clavibacter michiganensis subsp. insidiosus # 40 reads uniquely mapped to Collinsella (multi-hits among diff. species in Collinsella allowed) 11 Collinsella Collinsella tanakaei YIT 12063 10 Collinsella Collinsella sp. MS5 9 Collinsella Collinsella aerofaciens ATCC 25986 6 Collinsella Collinsella stercoris DSM 13279 4 Collinsella Collinsella intestinalis DSM 13280 # 117 reads uniquely mapped to Comamonas (multi-hits among diff. species in Comamonas allowed) 102 Comamonas Comamonas kerstersii 8 Comamonas Comamonas testosteroni TK102 2 Comamonas Comamonas aquatica 2 Comamonas Comamonas sp. B-9 2 Comamonas Comamonas granuli NBRC 101663 1 Comamonas Comamonas testosteroni CNB-2 # 138 reads uniquely mapped to Corynebacterium (multi-hits among diff. species in Corynebacterium allowed) 32 Corynebacterium Corynebacterium variabile 24 Corynebacterium Corynebacterium pseudotuberculosis 7 Corynebacterium Corynebacterium ulcerans 4 Corynebacterium Corynebacterium glutamicum 3 Corynebacterium Corynebacterium xerosis NBRC 16721 3 Corynebacterium Corynebacterium accolens ATCC 49725 3 Corynebacterium Corynebacterium matruchotii ATCC 14266 3 Corynebacterium Corynebacterium aurimucosum 2 Corynebacterium Corynebacterium simulans 2 Corynebacterium Corynebacterium argentoratense DSM 44202 2 Corynebacterium [Brevibacterium] flavum 2 Corynebacterium Corynebacterium ulceribovis DSM 45146 2 Corynebacterium Corynebacterium glutamicum ATCC 13032 2 Corynebacterium Corynebacterium sp. NML98-0116 2 Corynebacterium Corynebacterium diphtheriae HC01 2 Corynebacterium Corynebacterium pseudotuberculosis 3/99-5 2 Corynebacterium NC_017307 2 Corynebacterium Corynebacterium pseudodiphtheriticum DSM 44287 2 Corynebacterium Corynebacterium diphtheriae NCTC 13129 2 Corynebacterium Corynebacterium falsenii 2 Corynebacterium Corynebacterium humireducens NBRC 106098 = DSM 45392 2 Corynebacterium Corynebacterium stationis 1 Corynebacterium Corynebacterium diphtheriae VA01 1 Corynebacterium Corynebacterium casei LMG S-19264 1 Corynebacterium Corynebacterium frankenforstense DSM 45800 1 Corynebacterium Corynebacterium ulcerans 809 1 Corynebacterium Corynebacterium deserti GIMN1.010 1 Corynebacterium Corynebacterium diphtheriae INCA 402 1 Corynebacterium Corynebacterium ulcerans 0102 1 Corynebacterium Corynebacterium pseudotuberculosis 316 1 Corynebacterium Corynebacterium atypicum 1 Corynebacterium Corynebacterium timonense 5401744 1 Corynebacterium Corynebacterium renale 1 Corynebacterium Corynebacterium crudilactis 1 Corynebacterium Corynebacterium pseudotuberculosis 31 1 Corynebacterium Corynebacterium pseudotuberculosis P54B96 1 Corynebacterium Corynebacterium lactis RW2-5 1 Corynebacterium Corynebacterium glutamicum R 1 Corynebacterium Corynebacterium singulare 1 Corynebacterium Corynebacterium sphenisci DSM 44792 1 Corynebacterium Corynebacterium pseudotuberculosis FRC41 1 Corynebacterium Corynebacterium aurimucosum ATCC 700975 1 Corynebacterium Corynebacterium ulcerans FRC58 1 Corynebacterium Corynebacterium urealyticum DSM 7109 1 Corynebacterium NC_018019 1 Corynebacterium Corynebacterium kutscheri 1 Corynebacterium Corynebacterium pseudotuberculosis 258 1 Corynebacterium Corynebacterium lipophiloflavum DSM 44291 1 Corynebacterium Corynebacterium callunae DSM 20147 1 Corynebacterium Corynebacterium pseudotuberculosis 1/06-A 1 Corynebacterium Corynebacterium pseudotuberculosis 1002 1 Corynebacterium Corynebacterium pseudotuberculosis 42/02-A 1 Corynebacterium Corynebacterium diphtheriae PW8 # 95 reads uniquely mapped to Cupriavidus (multi-hits among diff. species in Cupriavidus allowed) 56 Cupriavidus Cupriavidus basilensis 21 Cupriavidus Cupriavidus metallidurans CH34 7 Cupriavidus Cupriavidus sp. USMAA1020 3 Cupriavidus Cupriavidus sp. USMAHM13 3 Cupriavidus Cupriavidus gilardii CR3 2 Cupriavidus Ralstonia eutropha H16 1 Cupriavidus Cupriavidus necator 1 Cupriavidus Cupriavidus necator N-1 1 Cupriavidus Ralstonia eutropha JMP134 # 26 reads uniquely mapped to Curvibacter (multi-hits among diff. species in Curvibacter allowed) 13 Curvibacter Curvibacter lanceolatus ATCC 14669 13 Curvibacter Curvibacter sp. PAE-UM # 278 reads uniquely mapped to Cutibacterium (multi-hits among diff. species in Cutibacterium allowed) 72 Cutibacterium Cutibacterium acnes 26 Cutibacterium Propionibacterium acnes subsp. defendens ATCC 11828 24 Cutibacterium Cutibacterium avidum 44067 24 Cutibacterium Cutibacterium avidum 15 Cutibacterium [Propionibacterium] humerusii P08 14 Cutibacterium Propionibacterium acnes TypeIA2 P.acn33 13 Cutibacterium Propionibacterium acnes KPA171202 13 Cutibacterium Propionibacterium acnes HL096PA1 13 Cutibacterium Cutibacterium granulosum DSM 20700 11 Cutibacterium Propionibacterium acnes SK137 11 Cutibacterium Propionibacterium acnes C1 10 Cutibacterium Propionibacterium acnes 6609 9 Cutibacterium Propionibacterium acnes TypeIA2 P.acn31 8 Cutibacterium Propionibacterium acnes TypeIA2 P.acn17 8 Cutibacterium Propionibacterium acnes 266 6 Cutibacterium Propionibacterium acnes hdn-1 1 Cutibacterium [Propionibacterium] namnetense SK182B-JCVI # 23 reads uniquely mapped to Delftia (multi-hits among diff. species in Delftia allowed) 8 Delftia Delftia tsuruhatensis 8 Delftia Delftia acidovorans SPH-1 5 Delftia Delftia sp. Cs1-4 2 Delftia Delftia sp. HK171 # 75 reads uniquely mapped to Devosia (multi-hits among diff. species in Devosia allowed) 18 Devosia Devosia sp. A16 12 Devosia Devosia insulae DS-56 10 Devosia Devosia chinhatensis 8 Devosia Devosia geojensis 7 Devosia Devosia sp. H5989 6 Devosia Devosia sp. LC5 6 Devosia Devosia soli 3 Devosia Devosia psychrophila 2 Devosia Devosia epidermidihirudinis 1 Devosia Devosia sp. Root436 1 Devosia Devosia riboflavina 1 Devosia Devosia sp. Root685 # 117 reads uniquely mapped to Dietzia (multi-hits among diff. species in Dietzia allowed) 50 Dietzia Dietzia maris 42 Dietzia Dietzia timorensis 14 Dietzia Dietzia sp. UCD-THP 11 Dietzia Dietzia alimentaria 72 # 74 reads uniquely mapped to Dolosigranulum (multi-hits among diff. species in Dolosigranulum allowed) 74 Dolosigranulum Dolosigranulum pigrum ATCC 51524 # 203 reads uniquely mapped to Escherichia (multi-hits among diff. species in Escherichia allowed) 112 Escherichia Escherichia coli 26 Escherichia Escherichia coli K-12 8 Escherichia Escherichia coli BW2952 7 Escherichia Escherichia coli BL21(DE3) 7 Escherichia Escherichia coli O157:H7 7 Escherichia Escherichia coli B 3 Escherichia Escherichia coli 'BL21-Gold(DE3)pLysS AG' 2 Escherichia Escherichia coli UMN026 2 Escherichia Escherichia coli KLY 2 Escherichia Escherichia coli O145:H28 str. RM13514 2 Escherichia Escherichia coli DH1 2 Escherichia Escherichia coli ACN001 2 Escherichia Escherichia coli O157:H7 str. SS17 1 Escherichia Escherichia coli KO11FL 1 Escherichia Escherichia coli O157:H7 str. EDL933 1 Escherichia Escherichia coli str. Sanji 1 Escherichia Escherichia coli str. K-12 substr. MG1655 1 Escherichia NZ_CP014197 1 Escherichia Escherichia coli HS 1 Escherichia Escherichia coli APEC O1 1 Escherichia Escherichia coli SE11 1 Escherichia Escherichia coli O139:H28 str. E24377A 1 Escherichia Escherichia coli ER2796 1 Escherichia Escherichia coli O111:H- str. 11128 1 Escherichia Escherichia coli O157:H7 str. TW14359 1 Escherichia Escherichia coli UMNK88 1 Escherichia Escherichia coli str. K-12 substr. MC4100 1 Escherichia Escherichia coli ATCC 25922 1 Escherichia Escherichia coli W 1 Escherichia Escherichia coli O104:H4 str. 2009EL-2050 1 Escherichia Escherichia coli O25b:H4-ST131 1 Escherichia Escherichia coli 042 1 Escherichia Escherichia coli APEC O78 1 Escherichia Escherichia coli O7:K1 str. CE10 # 54 reads uniquely mapped to Eubacterium (multi-hits among diff. species in Eubacterium allowed) 14 Eubacterium Eubacterium sp. 3_1_31 11 Eubacterium Eubacterium sp. AB3007 6 Eubacterium [Eubacterium] eligens ATCC 27750 5 Eubacterium Eubacterium limosum 4 Eubacterium Eubacterium limosum KIST612 3 Eubacterium Eubacterium sp. ER2 3 Eubacterium Eubacterium plexicaudatum ASF492 2 Eubacterium [Eubacterium] hallii DSM 3353 2 Eubacterium Eubacterium ramulus ATCC 29099 2 Eubacterium Eubacterium ventriosum ATCC 27560 1 Eubacterium Eubacterium xylanophilum ATCC 35991 1 Eubacterium [Eubacterium] cellulosolvens 6 # 26 reads uniquely mapped to Gemella (multi-hits among diff. species in Gemella allowed) 18 Gemella Gemella haemolysans ATCC 10379 7 Gemella Gemella sp. oral taxon 928 1 Gemella Gemella bergeriae ATCC 700627 # 114 reads uniquely mapped to Gordonia (multi-hits among diff. species in Gordonia allowed) 21 Gordonia Gordonia kroppenstedtii DSM 45133 16 Gordonia Gordonia sp. QH-11 12 Gordonia Gordonia terrae 10 Gordonia Gordonia hirsuta DSM 44140 = NBRC 16056 7 Gordonia Gordonia shandongensis DSM 45094 7 Gordonia Gordonia araii NBRC 100433 5 Gordonia Gordonia malaquae NBRC 108250 5 Gordonia Gordonia effusa NBRC 100432 5 Gordonia Gordonia polyisoprenivorans VH2 5 Gordonia Gordonia sihwensis NBRC 108236 5 Gordonia Gordonia sp. KTR9 4 Gordonia Gordonia paraffinivorans NBRC 108238 3 Gordonia Gordonia sputi NBRC 100414 2 Gordonia Gordonia neofelifaecis NRRL B-59395 2 Gordonia Gordonia bronchialis DSM 43247 2 Gordonia Gordonia amarae NBRC 15530 1 Gordonia Gordonia soli NBRC 108243 1 Gordonia Gordonia amicalis NBRC 100051 = JCM 11271 1 Gordonia Gordonia desulfuricans NBRC 100010 # 28 reads uniquely mapped to Granulicatella (multi-hits among diff. species in Granulicatella allowed) 22 Granulicatella Granulicatella adiacens ATCC 49175 6 Granulicatella Granulicatella elegans ATCC 700633 # 43 reads uniquely mapped to Haemophilus (multi-hits among diff. species in Haemophilus allowed) 23 Haemophilus [Haemophilus] ducreyi 6 Haemophilus Haemophilus parainfluenzae T3T1 5 Haemophilus Haemophilus influenzae 3 Haemophilus Haemophilus ducreyi 35000HP 2 Haemophilus Haemophilus sputorum CCUG 13788 1 Haemophilus [Haemophilus] parasuis 1 Haemophilus Haemophilus influenzae Rd KW20 1 Haemophilus Haemophilus influenzae R2866 1 Haemophilus Haemophilus parasuis SH0165 # 38 reads uniquely mapped to Hymenobacter (multi-hits among diff. species in Hymenobacter allowed) 23 Hymenobacter Hymenobacter terrenus 6 Hymenobacter Hymenobacter sp. IS2118 4 Hymenobacter Hymenobacter sp. PAMC 26554 2 Hymenobacter Hymenobacter sp. DG25A 2 Hymenobacter Hymenobacter sp. AT01-02 1 Hymenobacter Hymenobacter sedentarius # 16 reads uniquely mapped to Ideonella (multi-hits among diff. species in Ideonella allowed) 10 Ideonella Ideonella sp. B508-1 6 Ideonella Ideonella sakaiensis # 120 reads uniquely mapped to Kocuria (multi-hits among diff. species in Kocuria allowed) 48 Kocuria Kocuria palustris 36 Kocuria Kocuria kristinae 8 Kocuria Kocuria sp. ZOR0020 8 Kocuria Kocuria turfanensis 6 Kocuria Kocuria polaris 6 Kocuria Kocuria flava 4 Kocuria Kocuria rhizophila DC2201 3 Kocuria Kocuria marina 1 Kocuria Kocuria salsicia # 129 reads uniquely mapped to Lactobacillus (multi-hits among diff. species in Lactobacillus allowed) 26 Lactobacillus Lactobacillus curvatus 25 Lactobacillus Lactobacillus sakei subsp. sakei 23K 11 Lactobacillus Lactobacillus backii 7 Lactobacillus Lactobacillus floricola DSM 23037 = JCM 16512 5 Lactobacillus Lactobacillus plantarum 4 Lactobacillus Lactobacillus vaginalis DSM 5837 = ATCC 49540 3 Lactobacillus Lactobacillus delbrueckii subsp. bulgaricus 2 Lactobacillus Lactobacillus amylolyticus 2 Lactobacillus Lactobacillus crispatus ST1 2 Lactobacillus Lactobacillus apis 2 Lactobacillus Lactobacillus gasseri ATCC 33323 = JCM 1131 1 Lactobacillus Lactobacillus shenzhenensis LY-73 1 Lactobacillus Lactobacillus paracasei 1 Lactobacillus Lactobacillus saerimneri DSM 16049 1 Lactobacillus Lactobacillus delbrueckii subsp. bulgaricus 2038 1 Lactobacillus Lactobacillus mellis 1 Lactobacillus Lactobacillus parabuchneri 1 Lactobacillus Lactobacillus malefermentans DSM 5705 = KCTC 3548 1 Lactobacillus Lactobacillus acidipiscis 1 Lactobacillus Lactobacillus salivarius UCC118 1 Lactobacillus Lactobacillus herbarum 1 Lactobacillus Lactobacillus acidophilus La-14 1 Lactobacillus Lactobacillus johnsonii DPC 6026 1 Lactobacillus Lactobacillus animalis KCTC 3501 = DSM 20602 1 Lactobacillus Lactobacillus satsumensis DSM 16230 = JCM 12392 1 Lactobacillus Lactobacillus perolens DSM 12744 1 Lactobacillus Lactobacillus fermentum F-6 1 Lactobacillus Lactobacillus helveticus 1 Lactobacillus Lactobacillus paracasei ATCC 334 1 Lactobacillus Lactobacillus amylolyticus DSM 11664 1 Lactobacillus Lactobacillus graminis DSM 20719 1 Lactobacillus Lactobacillus brevis KB290 1 Lactobacillus Lactobacillus ginsenosidimutans 1 Lactobacillus Lactobacillus crustorum 1 Lactobacillus Lactobacillus hokkaidonensis JCM 18461 1 Lactobacillus Lactobacillus paracollinoides 1 Lactobacillus Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 1 Lactobacillus Lactobacillus delbrueckii subsp. delbrueckii 1 Lactobacillus Lactobacillus helveticus CNRZ32 1 Lactobacillus Lactobacillus casei BD-II 1 Lactobacillus Lactobacillus iners DSM 13335 1 Lactobacillus Lactobacillus salivarius 1 Lactobacillus Lactobacillus acidifarinae DSM 19394 1 Lactobacillus Lactobacillus plantarum ZJ316 1 Lactobacillus Lactobacillus selangorensis 1 Lactobacillus Lactobacillus fuchuensis DSM 14340 = JCM 11249 1 Lactobacillus Lactobacillus fermentum CECT 5716 1 Lactobacillus Lactobacillus diolivorans DSM 14421 1 Lactobacillus Lactobacillus acidipiscis KCTC 13900 1 Lactobacillus Lactobacillus rhamnosus LOCK908 1 Lactobacillus Lactobacillus casei BL23 # 51 reads uniquely mapped to Lactococcus (multi-hits among diff. species in Lactococcus allowed) 9 Lactococcus Lactococcus piscium MKFS47 7 Lactococcus Lactococcus lactis subsp. lactis Il1403 4 Lactococcus Lactococcus lactis 4 Lactococcus Lactococcus lactis subsp. lactis 4 Lactococcus Lactococcus lactis subsp. cremoris NZ9000 4 Lactococcus Lactococcus lactis subsp. cremoris SK11 4 Lactococcus Lactococcus lactis subsp. cremoris MG1363 3 Lactococcus Lactococcus garvieae Lg2 2 Lactococcus Lactococcus lactis subsp. lactis KLDS 4.0325 2 Lactococcus Lactococcus lactis subsp. lactis KF147 2 Lactococcus Lactococcus lactis subsp. lactis CV56 2 Lactococcus Lactococcus lactis subsp. cremoris UC509.9 2 Lactococcus Lactococcus lactis subsp. cremoris KW2 2 Lactococcus Lactococcus garvieae ATCC 49156 # 22 reads uniquely mapped to Leptotrichia (multi-hits among diff. species in Leptotrichia allowed) 13 Leptotrichia Leptotrichia buccalis C-1013-b 4 Leptotrichia Leptotrichia sp. oral taxon 847 2 Leptotrichia Leptotrichia sp. oral taxon 212 1 Leptotrichia Leptotrichia goodfellowii DSM 19756 1 Leptotrichia Leptotrichia shahii DSM 19757 1 Leptotrichia Leptotrichia wadei DSM 19758 # 23 reads uniquely mapped to Leuconostoc (multi-hits among diff. species in Leuconostoc allowed) 6 Leuconostoc Leuconostoc carnosum JB16 3 Leuconostoc Leuconostoc mesenteroides subsp. mesenteroides 2 Leuconostoc Leuconostoc mesenteroides KFRI-MG 2 Leuconostoc Leuconostoc gelidum subsp. gasicomitatum LMG 18811 2 Leuconostoc Leuconostoc garlicum 2 Leuconostoc Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 2 Leuconostoc Leuconostoc kimchii IMSNU 11154 1 Leuconostoc Leuconostoc mesenteroides subsp. mesenteroides J18 1 Leuconostoc Leuconostoc lactis 1 Leuconostoc Leuconostoc citreum KM20 1 Leuconostoc Leuconostoc sp. C2 # 30 reads uniquely mapped to Marinomonas (multi-hits among diff. species in Marinomonas allowed) 11 Marinomonas Marinomonas profundimaris 9 Marinomonas Marinomonas posidonica IVIA-Po-181 4 Marinomonas Marinomonas mediterranea MMB-1 2 Marinomonas Marinomonas sp. MWYL1 2 Marinomonas Marinomonas ushuaiensis DSM 15871 1 Marinomonas Marinomonas fungiae 1 Marinomonas Marinomonas sp. MED121 # 34 reads uniquely mapped to Meiothermus (multi-hits among diff. species in Meiothermus allowed) 12 Meiothermus Meiothermus chliarophilus DSM 9957 11 Meiothermus Meiothermus ruber DSM 1279 7 Meiothermus Meiothermus silvanus DSM 9946 2 Meiothermus Meiothermus cerbereus DSM 11376 2 Meiothermus Meiothermus timidus DSM 17022 # 168 reads uniquely mapped to Methylobacterium (multi-hits among diff. species in Methylobacterium allowed) 101 Methylobacterium Methylobacterium phyllosphaerae 10 Methylobacterium Methylobacterium sp. ZNC0032 9 Methylobacterium Methylobacterium aquaticum 7 Methylobacterium Methylobacterium sp. C1 7 Methylobacterium Methylobacterium radiotolerans JCM 2831 5 Methylobacterium Methylobacterium sp. 4-46 4 Methylobacterium Methylobacterium extorquens AM1 3 Methylobacterium Methylobacterium extorquens CM4 3 Methylobacterium Methylobacterium extorquens 3 Methylobacterium Methylobacterium sp. Leaf99 3 Methylobacterium Methylobacterium populi BJ001 3 Methylobacterium Methylobacterium sp. 77 3 Methylobacterium Methylobacterium nodulans ORS 2060 2 Methylobacterium Methylobacterium sp. Leaf89 1 Methylobacterium Methylobacterium sp. Leaf456 1 Methylobacterium Methylobacterium extorquens DM4 1 Methylobacterium Methylobacterium populi 1 Methylobacterium Methylobacterium extorquens PA1 1 Methylobacterium Methylobacterium sp. Leaf399 # 33 reads uniquely mapped to Methylotenera (multi-hits among diff. species in Methylotenera allowed) 19 Methylotenera Methylotenera versatilis 301 6 Methylotenera Methylotenera versatilis 79 4 Methylotenera Methylotenera mobilis JLW8 4 Methylotenera Methylotenera sp. 1P/1 # 151 reads uniquely mapped to Micrococcus (multi-hits among diff. species in Micrococcus allowed) 151 Micrococcus Micrococcus luteus NCTC 2665 # 45 reads uniquely mapped to Moraxella (multi-hits among diff. species in Moraxella allowed) 13 Moraxella Moraxella catarrhalis 10 Moraxella Moraxella osloensis 8 Moraxella Moraxella bovoculi 6 Moraxella Moraxella catarrhalis BBH18 3 Moraxella Moraxella ovis 2 Moraxella Moraxella caprae DSM 19149 2 Moraxella Moraxella boevrei DSM 14165 1 Moraxella Moraxella macacae 0408225 # 6516 reads uniquely mapped to Mycobacterium (multi-hits among diff. species in Mycobacterium allowed) 3225 Mycobacterium Mycobacterium cosmeticum 3167 Mycobacterium Mycobacterium aurum 13 Mycobacterium Mycobacterium abscessus 7 Mycobacterium Mycobacterium tuberculosis 6 Mycobacterium Mycobacterium hassiacum DSM 44199 6 Mycobacterium Mycobacterium sp. UM_Kg1 5 Mycobacterium Mycobacterium abscessus subsp. abscessus 5 Mycobacterium Mycobacterium smegmatis 5 Mycobacterium Mycobacterium abscessus subsp. bolletii 4 Mycobacterium Mycobacterium avium subsp. paratuberculosis 4 Mycobacterium Mycobacterium bovis BCG str. Tokyo 172 3 Mycobacterium Mycobacterium immunogenum 3 Mycobacterium Mycobacterium smegmatis str. MC2 155 3 Mycobacterium Mycobacterium liflandii 128FXT 2 Mycobacterium Mycobacterium abscessus subsp. bolletii 103 2 Mycobacterium Mycobacterium abscessus UC22 2 Mycobacterium Mycobacterium sp. JLS 2 Mycobacterium Mycobacterium avium subsp. avium 2285 (R) 2 Mycobacterium Mycobacterium avium subsp. paratuberculosis K-10 2 Mycobacterium Mycobacterium goodii 2 Mycobacterium Mycobacterium vaccae 95051 2 Mycobacterium NZ_CP020381 2 Mycobacterium Mycobacterium sp. VKM Ac-1817D 2 Mycobacterium Mycobacterium simiae 2 Mycobacterium Mycobacterium abscessus subsp. massiliense str. GO 06 2 Mycobacterium Mycobacterium marinum M 2 Mycobacterium Mycobacterium xenopi RIVM700367 2 Mycobacterium Mycobacterium heckeshornense 1 Mycobacterium Mycobacterium fortuitum 1 Mycobacterium Mycobacterium elephantis 1 Mycobacterium Mycobacterium tuberculosis W-148 1 Mycobacterium Mycobacterium sp. EPa45 1 Mycobacterium Mycobacterium aromaticivorans JS19b1 = JCM 16368 1 Mycobacterium Mycobacterium intracellulare MOTT-02 1 Mycobacterium Mycobacterium gilvum PYR-GCK 1 Mycobacterium Mycobacterium mageritense DSM 44476 = CIP 104973 1 Mycobacterium Mycobacterium litorale 1 Mycobacterium Mycobacterium bovis 1 Mycobacterium Mycobacterium tuberculosis CDC1551 1 Mycobacterium Mycobacterium tuberculosis H37Rv 1 Mycobacterium Mycobacterium marinum E11 1 Mycobacterium Mycobacterium genavense ATCC 51234 1 Mycobacterium Mycobacterium iranicum UM_TJL 1 Mycobacterium Mycobacterium chubuense NBB4 1 Mycobacterium Mycobacterium leprae TN 1 Mycobacterium Mycobacterium nebraskense 1 Mycobacterium Mycobacterium arupense 1 Mycobacterium Mycobacterium heraklionense 1 Mycobacterium Mycobacterium leprae Br4923 1 Mycobacterium Mycobacterium parascrofulaceum ATCC BAA-614 1 Mycobacterium Mycobacterium tuberculosis KZN 4207 1 Mycobacterium Mycobacterium abscessus subsp. massiliense CCUG 48898 = JCM 15300 1 Mycobacterium Mycobacterium chlorophenolicum 1 Mycobacterium Mycobacterium sp. Root265 1 Mycobacterium Mycobacterium tuberculosis KZN 1435 1 Mycobacterium Mycobacterium gilvum Spyr1 1 Mycobacterium Mycobacterium avium 104 1 Mycobacterium Mycobacterium phlei 1 Mycobacterium Mycobacterium neoaurum VKM Ac-1815D 1 Mycobacterium Mycobacterium yongonense 05-1390 # 112 reads uniquely mapped to Nesterenkonia (multi-hits among diff. species in Nesterenkonia allowed) 37 Nesterenkonia Nesterenkonia jeotgali 36 Nesterenkonia Nesterenkonia massiliensis 21 Nesterenkonia Nesterenkonia sp. F 18 Nesterenkonia Nesterenkonia alba DSM 19423 # 25 reads uniquely mapped to Nevskia (multi-hits among diff. species in Nevskia allowed) 21 Nevskia Nevskia ramosa DSM 11499 4 Nevskia Nevskia soli DSM 19509 # 11976 reads uniquely mapped to Nocardia (multi-hits among diff. species in Nocardia allowed) 4060 Nocardia Nocardia brevicatena NBRC 12119 3980 Nocardia Nocardia pneumoniae NBRC 100136 1353 Nocardia Nocardia jiangxiensis NBRC 101359 1201 Nocardia Nocardia niigatensis NBRC 100131 1133 Nocardia Nocardia veterana NBRC 100344 139 Nocardia Nocardia otitidiscaviarum NBRC 14405 32 Nocardia Nocardia sp. 348MFTsu5.1 18 Nocardia Nocardia sp. CNY236 17 Nocardia Nocardia farcinica 15 Nocardia Nocardia seriolae 7 Nocardia Nocardia sp. BMG51109 5 Nocardia Nocardia mikamii NBRC 108933 3 Nocardia Nocardia rhamnosiphila NBRC 108938 3 Nocardia Nocardia nova SH22a 2 Nocardia Nocardia asteroides NBRC 15531 2 Nocardia Nocardia transvalensis NBRC 15921 2 Nocardia Nocardia soli 2 Nocardia Nocardia niwae NBRC 108934 = DSM 45340 1 Nocardia Nocardia arthritidis NBRC 100137 1 Nocardia Nocardia takedensis NBRC 100417 # 28 reads uniquely mapped to Paraburkholderia (multi-hits among diff. species in Paraburkholderia allowed) 6 Paraburkholderia Paraburkholderia fungorum 5 Paraburkholderia Paraburkholderia sacchari 3 Paraburkholderia Paraburkholderia xenovorans LB400 3 Paraburkholderia Paraburkholderia caribensis 2 Paraburkholderia Paraburkholderia phytofirmans PsJN 2 Paraburkholderia Paraburkholderia rhizoxinica HKI 454 2 Paraburkholderia Paraburkholderia sprentiae WSM5005 1 Paraburkholderia Paraburkholderia phymatum STM815 1 Paraburkholderia Paraburkholderia sp. SOS3 1 Paraburkholderia Paraburkholderia phenoliruptrix BR3459a 1 Paraburkholderia Paraburkholderia caribensis MBA4 1 Paraburkholderia Paraburkholderia andropogonis # 73 reads uniquely mapped to Paracoccus (multi-hits among diff. species in Paracoccus allowed) 14 Paracoccus Paracoccus yeei ATCC BAA-599 14 Paracoccus Paracoccus aminovorans 11 Paracoccus Paracoccus sp. 228 7 Paracoccus Paracoccus yeei 5 Paracoccus Paracoccus aminophilus JCM 7686 5 Paracoccus Paracoccus denitrificans PD1222 5 Paracoccus Paracoccus sp. TRP 4 Paracoccus Paracoccus sanguinis 2 Paracoccus Paracoccus zeaxanthinifaciens ATCC 21588 2 Paracoccus Paracoccus versutus 2 Paracoccus Paracoccus sphaerophysae 1 Paracoccus Paracoccus sp. J55 1 Paracoccus Paracoccus halophilus # 37 reads uniquely mapped to Parageobacillus (multi-hits among diff. species in Parageobacillus allowed) 19 Parageobacillus Parageobacillus thermoglucosidans 10 Parageobacillus Parageobacillus thermoglucosidasius C56-YS93 7 Parageobacillus Parageobacillus caldoxylosilyticus NBRC 107762 1 Parageobacillus Parageobacillus toebii NBRC 107807 # 41 reads uniquely mapped to Pectobacterium (multi-hits among diff. species in Pectobacterium allowed) 10 Pectobacterium Pectobacterium carotovorum subsp. brasiliense 7 Pectobacterium Pectobacterium parmentieri 5 Pectobacterium Pectobacterium atrosepticum 5 Pectobacterium Pectobacterium wasabiae CFBP 3304 4 Pectobacterium Pectobacterium parmentieri WPP163 4 Pectobacterium Pectobacterium carotovorum subsp. carotovorum PCC21 3 Pectobacterium Pectobacterium atrosepticum SCRI1043 3 Pectobacterium Pectobacterium sp. SCC3193 # 15 reads uniquely mapped to Peptostreptococcus (multi-hits among diff. species in Peptostreptococcus allowed) 10 Peptostreptococcus Peptostreptococcus stomatis DSM 17678 5 Peptostreptococcus Peptostreptococcus anaerobius VPI 4330 = DSM 2949 # 14 reads uniquely mapped to Polaromonas (multi-hits among diff. species in Polaromonas allowed) 7 Polaromonas Polaromonas sp. EUR3 1.2.1 5 Polaromonas Polaromonas naphthalenivorans CJ2 2 Polaromonas Polaromonas sp. JS666 # 116 reads uniquely mapped to Prevotella (multi-hits among diff. species in Prevotella allowed) 94 Prevotella Prevotella sp. S7 MS 2 4 Prevotella Prevotella pallens ATCC 700821 4 Prevotella Prevotella nigrescens ATCC 33563 3 Prevotella Prevotella sp. HUN102 2 Prevotella Prevotella enoeca 2 Prevotella Prevotella sp. 10(H) 2 Prevotella Prevotella ruminicola 23 1 Prevotella Prevotella intermedia 1 Prevotella Prevotella copri DSM 18205 1 Prevotella Prevotella bryantii B14 1 Prevotella Prevotella timonensis 4401737 = DSM 22865 = JCM 15640 1 Prevotella Prevotella melaninogenica ATCC 25845 # 6372 reads uniquely mapped to Pseudomonas (multi-hits among diff. species in Pseudomonas allowed) 6328 Pseudomonas Pseudomonas pelagia CL-AP6 8 Pseudomonas Pseudomonas aeruginosa 4 Pseudomonas Pseudomonas putida 2 Pseudomonas Pseudomonas sp. S-6-2 2 Pseudomonas Pseudomonas aeruginosa PA7 2 Pseudomonas Pseudomonas saudimassiliensis 2 Pseudomonas Pseudomonas azotoformans 1 Pseudomonas Pseudomonas sp. ATCC 13867 1 Pseudomonas Pseudomonas knackmussii B13 1 Pseudomonas Pseudomonas putida JB 1 Pseudomonas Pseudomonas monteilii SB3101 1 Pseudomonas Pseudomonas cremoricolorata 1 Pseudomonas Pseudomonas aeruginosa SCV20265 1 Pseudomonas Pseudomonas syringae pv. lapsa 1 Pseudomonas Pseudomonas sp. CC6-YY-74 1 Pseudomonas Pseudomonas versuta 1 Pseudomonas Pseudomonas fluorescens F113 1 Pseudomonas Pseudomonas protegens 1 Pseudomonas Pseudomonas otitidis 1 Pseudomonas Pseudomonas lutea 1 Pseudomonas Pseudomonas frederiksbergensis 1 Pseudomonas Pseudomonas fluorescens 1 Pseudomonas Pseudomonas koreensis 1 Pseudomonas Pseudomonas putida BIRD-1 1 Pseudomonas NZ_CP008871 1 Pseudomonas NZ_CP008869 1 Pseudomonas Pseudomonas stutzeri DSM 10701 1 Pseudomonas Pseudomonas savastanoi pv. phaseolicola 1448A 1 Pseudomonas Pseudomonas veronii 1 Pseudomonas Pseudomonas aeruginosa VRFPA04 1 Pseudomonas Pseudomonas psychrotolerans # 40 reads uniquely mapped to Ralstonia (multi-hits among diff. species in Ralstonia allowed) 14 Ralstonia Ralstonia pickettii 12J 10 Ralstonia Ralstonia insidiosa 8 Ralstonia Ralstonia solanacearum 3 Ralstonia Ralstonia pickettii 12D 1 Ralstonia Ralstonia solanacearum FJAT-1458 1 Ralstonia Ralstonia solanacearum PSI07 1 Ralstonia Ralstonia solanacearum GMI1000 1 Ralstonia Ralstonia solanacearum OE1-1 1 Ralstonia Ralstonia sp. PBA # 61 reads uniquely mapped to Rhodoplanes (multi-hits among diff. species in Rhodoplanes allowed) 61 Rhodoplanes Rhodoplanes sp. Z2-YC6860 # 138 reads uniquely mapped to Roseovarius (multi-hits among diff. species in Roseovarius allowed) 115 Roseovarius Roseovarius tolerans 8 Roseovarius Roseovarius indicus 7 Roseovarius Roseovarius nubinhibens ISM 4 Roseovarius Roseovarius sp. 217 4 Roseovarius Roseovarius atlanticus # 40 reads uniquely mapped to Sphingobium (multi-hits among diff. species in Sphingobium allowed) 7 Sphingobium Sphingobium sp. C100 7 Sphingobium Sphingobium sp. RAC03 6 Sphingobium Sphingobium yanoikuyae ATCC 51230 4 Sphingobium Sphingobium lactosutens DS20 3 Sphingobium Sphingobium sp. SYK-6 3 Sphingobium Sphingobium baderi LL03 2 Sphingobium Sphingobium ummariense RL-3 2 Sphingobium Sphingobium sp. TKS 2 Sphingobium Sphingobium sp. EP60837 1 Sphingobium Sphingobium chlorophenolicum L-1 1 Sphingobium Sphingobium xenophagum NBRC 107872 1 Sphingobium Sphingobium sp. YBL2 1 Sphingobium Sphingobium indicum B90A # 144 reads uniquely mapped to Sphingomonas (multi-hits among diff. species in Sphingomonas allowed) 50 Sphingomonas Sphingomonas sp. Leaf339 20 Sphingomonas Sphingomonas sp. Leaf33 11 Sphingomonas Sphingomonas melonis TY 10 Sphingomonas Sphingomonas paucimobilis NBRC 13935 9 Sphingomonas Sphingomonas sp. LK11 7 Sphingomonas Sphingomonas sp. NIC1 4 Sphingomonas Sphingomonas echinoides ATCC 14820 3 Sphingomonas Sphingomonas sp. ERG5 3 Sphingomonas Sphingomonas sp. URHD0057 2 Sphingomonas Sphingomonas phyllosphaerae FA2 2 Sphingomonas Sphingomonas sp. JJ-A5 2 Sphingomonas Sphingomonas sp. MM-1 2 Sphingomonas Sphingomonas jaspsi DSM 18422 2 Sphingomonas Sphingomonas sp. PR090111-T3T-6A 2 Sphingomonas Sphingomonas wittichii RW1 2 Sphingomonas Sphingomonas sanxanigenens DSM 19645 = NX02 2 Sphingomonas Sphingomonas changbaiensis NBRC 104936 2 Sphingomonas Sphingomonas koreensis 1 Sphingomonas Sphingomonas panacis 1 Sphingomonas Sphingomonas elodea ATCC 31461 1 Sphingomonas Sphingomonas wittichii 1 Sphingomonas Sphingomonas sp. Leaf231 1 Sphingomonas Sphingomonas sp. Ag1 1 Sphingomonas Sphingomonas sp. LM7 1 Sphingomonas Sphingomonas sp. Leaf357 1 Sphingomonas Sphingomonas astaxanthinifaciens DSM 22298 1 Sphingomonas Sphingomonas sp. WG # 20 reads uniquely mapped to Spirosoma (multi-hits among diff. species in Spirosoma allowed) 12 Spirosoma Spirosoma rigui 2 Spirosoma Spirosoma luteum DSM 19990 2 Spirosoma Spirosoma panaciterrae DSM 21099 2 Spirosoma Spirosoma aerolatum 1 Spirosoma Spirosoma montaniterrae 1 Spirosoma Spirosoma radiotolerans # 72 reads uniquely mapped to Staphylococcus (multi-hits among diff. species in Staphylococcus allowed) 13 Staphylococcus Staphylococcus aureus 10 Staphylococcus Staphylococcus warneri SG1 7 Staphylococcus Staphylococcus epidermidis 5 Staphylococcus Staphylococcus epidermidis RP62A 4 Staphylococcus Staphylococcus capitis 4 Staphylococcus Staphylococcus epidermidis ATCC 12228 4 Staphylococcus Staphylococcus aureus subsp. aureus 3 Staphylococcus Staphylococcus schleiferi 3 Staphylococcus Staphylococcus hominis subsp. hominis C80 3 Staphylococcus Staphylococcus condimenti 2 Staphylococcus Staphylococcus carnosus 2 Staphylococcus Staphylococcus epidermidis PM221 1 Staphylococcus Staphylococcus sciuri subsp. sciuri 1 Staphylococcus Staphylococcus aureus subsp. aureus ST228 1 Staphylococcus Staphylococcus pseudintermedius HKU10-03 1 Staphylococcus Staphylococcus lugdunensis 1 Staphylococcus Staphylococcus cohnii subsp. cohnii 1 Staphylococcus Staphylococcus aureus subsp. aureus Tager 104 1 Staphylococcus Staphylococcus pseudintermedius 1 Staphylococcus Staphylococcus haemolyticus JCSC1435 1 Staphylococcus Staphylococcus aureus 08BA02176 1 Staphylococcus Staphylococcus saprophyticus 1 Staphylococcus Staphylococcus aureus subsp. aureus ST772-MRSA-V 1 Staphylococcus Staphylococcus equorum # 83 reads uniquely mapped to Streptococcus (multi-hits among diff. species in Streptococcus allowed) 6 Streptococcus Streptococcus mitis 5 Streptococcus Streptococcus sp. oral taxon 431 4 Streptococcus Streptococcus salivarius 4 Streptococcus Streptococcus oralis 4 Streptococcus Streptococcus pyogenes 4 Streptococcus Streptococcus thermophilus 3 Streptococcus Streptococcus criceti HS-6 3 Streptococcus Streptococcus infantis ATCC 700779 3 Streptococcus Streptococcus intermedius C270 2 Streptococcus Streptococcus marmotae 2 Streptococcus Streptococcus macacae NCTC 11558 2 Streptococcus Streptococcus himalayensis 2 Streptococcus Streptococcus mutans UA159-FR 2 Streptococcus Streptococcus pantholopis 2 Streptococcus Streptococcus sobrinus DSM 20742 = ATCC 33478 2 Streptococcus Streptococcus mutans UA159 1 Streptococcus Streptococcus pneumoniae SPN994038 1 Streptococcus Streptococcus equi subsp. equi 4047 1 Streptococcus Streptococcus agalactiae NEM316 1 Streptococcus Streptococcus pyogenes MGAS10270 1 Streptococcus Streptococcus thermophilus ASCC 1275 1 Streptococcus Streptococcus pneumoniae ST556 1 Streptococcus Streptococcus mutans LJ23 1 Streptococcus Streptococcus lutetiensis 033 1 Streptococcus Streptococcus sp. X13SY08 1 Streptococcus Streptococcus pneumoniae TCH8431/19A 1 Streptococcus Streptococcus thermophilus JIM 8232 1 Streptococcus Streptococcus suis S735 1 Streptococcus Streptococcus oralis Uo5 1 Streptococcus Streptococcus caballi DSM 19004 1 Streptococcus Streptococcus salivarius CCHSS3 1 Streptococcus Streptococcus ratti FA-1 = DSM 20564 1 Streptococcus Streptococcus sp. I-P16 1 Streptococcus Streptococcus mutans GS-5 1 Streptococcus Streptococcus agalactiae 1 Streptococcus Streptococcus pneumoniae SPN034156 1 Streptococcus Streptococcus pyogenes MGAS315 1 Streptococcus Streptococcus gallolyticus 1 Streptococcus Streptococcus pneumoniae SPNA45 1 Streptococcus Streptococcus pneumoniae TIGR4 1 Streptococcus Streptococcus dysgalactiae subsp. equisimilis AC-2713 1 Streptococcus Streptococcus sanguinis SK36 1 Streptococcus Streptococcus equi subsp. zooepidemicus ATCC 35246 1 Streptococcus Streptococcus pneumoniae 1 Streptococcus Streptococcus suis SC070731 1 Streptococcus Streptococcus equi subsp. zooepidemicus MGCS10565 1 Streptococcus Streptococcus thermophilus MN-ZLW-002 1 Streptococcus Streptococcus suis YB51 1 Streptococcus Streptococcus suis # 6446 reads uniquely mapped to Thalassobius (multi-hits among diff. species in Thalassobius allowed) 2323 Thalassobius Thalassobius gelatinovorus 2079 Thalassobius Thalassobius sp. CECT 5113 2044 Thalassobius Thalassobius mediterraneus # 40 reads uniquely mapped to Veillonella (multi-hits among diff. species in Veillonella allowed) 18 Veillonella Veillonella parvula DSM 2008 10 Veillonella Veillonella parvula 8 Veillonella Veillonella sp. oral taxon 780 str. F0422 4 Veillonella Veillonella magna DSM 19857