# 2018/02/02 10:02:25
# HUMAN	Target (Host) organism
# RNA	Sequencing source
# ENCSR000AFE_1	Replication ID
# ENCSR000AFE	Sample ID
# ENCFF001ROB	Read1
# ENCFF001ROA	Read2
R1	 102763963 (100.0000%)	[A] Total raw reads
R1	 100436437 (97.7351%)	[B] Total reads after QC of (A)
R1		
R1	 100436437 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	 194006728 (96.5818%)	[B-3] Total mapped reads of (B-2)x2
R1	   6866146 (3.4182%)	[B-4] Total unmapped reads of (B-2)x2
R1	  97239515 (96.8170%)	[F] Total mapped reads of (B-2)
R1	   3196922 (3.1830%)	[G] Total unmapped reads of (B-2)
R1	    301822 (0.3005%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	 100134615 (99.6995%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	    166070 (0.1653%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      1658.467	[I-3] RPMH of (I-1)
R1	      1653.484	[I-4] PPM of (I-1)
R1	       192 (0.0002%)	[I-5] Total chimeric reads of (I-1)
R1	         1.917	[I-7] RPMH of (I-5)
R1	         1.912	[I-8] PPM of (I-5)
R1		
## -----------------------------------------

R2	 102763963 (100.0000%)	[A] Total raw reads
R2	 100436437 (97.7351%)	[B] Total reads after QC of (A)
R2		
R2	 100436437 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	 194006728 (96.5818%)	[B-3] Total mapped reads of (B-2)x2
R2	   6866146 (3.4182%)	[B-4] Total unmapped reads of (B-2)x2
R2	  96767213 (96.3467%)	[F] Total mapped reads of (B-2)
R2	   3669224 (3.6533%)	[G] Total unmapped reads of (B-2)
R2	    508988 (0.5068%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	  99927449 (99.4932%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	    159911 (0.1592%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      1600.271	[I-3] RPMH of (I-1)
R2	      1592.161	[I-4] PPM of (I-1)
R2	        43 (0.0000%)	[I-5] Total chimeric reads of (I-1)
R2	         0.430	[I-7] RPMH of (I-5)
R2	         0.428	[I-8] PPM of (I-5)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMH   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
388.9911	387.8222	39651	816	38835	38951.477	3925971	ALL_R1	bacteria	Bacillus	0.0
12.5623	12.5246	2202	1885	317	1257.922	193813	ALL_R1	bacteria	Escherichia	0.0
<<
391.7552	389.7699	39624	607	39017	39147.096	3919911	ALL_R2	bacteria	Bacillus	0.0
2.0466	2.0362	613	510	103	204.507	59472	ALL_R2	bacteria	Cutibacterium	9.97e-05