# 2020/03/22 15:14:05 # HUMAN Target (Host) organism # RNA Sequencing source # ERR204877 Replication ID # ERR204877 Sample ID # ERR204877_1 Read1 # ERR204877_2 Read2 R1 17776978 (100.0000%) [A] Total raw reads R1 17299025 (97.3114%) [B] Total reads after QC of (A) R1 R1 17299025 (100.0000%) [B-2] Total reads of (B) passed to HISAT2 R1 30134102 (87.0977%) [B-3] Total mapped reads of (B-2)x2 R1 4463948 (12.9023%) [B-4] Total unmapped reads of (B-2)x2 R1 15110057 (87.3463%) [F] Total mapped reads of (B-2) R1 2188968 (12.6537%) [G] Total unmapped reads of (B-2) R1 31506 (0.1821%) [H] Total unmapped reads of (B-2) after running BLASTn with (G) R1 17267519 (99.8179%) [J] Total mapped reads to host genome ( (B-2)-H) R1 15398 (0.0890%) [I-1] Total mapped reads of (H) to exo. genomes R1 891.732 [I-3] RPMH of (I-1) R1 890.108 [I-4] PPM of (I-1) R1 488732.305 [I-5] RPMU of (I-1) R1 97 (0.0006%) [I-6] Total chimeric reads of (I-1) R1 5.617 [I-7] RPMH of (I-6) R1 5.607 [I-8] PPM of (I-6) R1 3078.779 [I-9] RPMU of (I-6) R1 ## ----------------------------------------- R2 17776978 (100.0000%) [A] Total raw reads R2 17299025 (97.3114%) [B] Total reads after QC of (A) R2 R2 17299025 (100.0000%) [B-2] Total reads of (B) passed to HISAT2 R2 30134102 (87.0977%) [B-3] Total mapped reads of (B-2)x2 R2 4463948 (12.9023%) [B-4] Total unmapped reads of (B-2)x2 R2 15024045 (86.8491%) [F] Total mapped reads of (B-2) R2 2274980 (13.1509%) [G] Total unmapped reads of (B-2) R2 59342 (0.3430%) [H] Total unmapped reads of (B-2) after running BLASTn with (G) R2 17239683 (99.6570%) [J] Total mapped reads to host genome ( (B-2)-H) R2 15375 (0.0889%) [I-1] Total mapped reads of (H) to exo. genomes R2 891.838 [I-3] RPMH of (I-1) R2 888.778 [I-4] PPM of (I-1) R2 259091.369 [I-5] RPMU of (I-1) R2 76 (0.0004%) [I-6] Total chimeric reads of (I-1) R2 4.408 [I-7] RPMH of (I-6) R2 4.393 [I-8] PPM of (I-6) R2 1280.712 [I-9] RPMU of (I-6) R2 ## ----------------------------------------- ##=============================================## # List threshold of RPMU > 1 # List threshold of P-value < 0.001 # RPMH PPM RPMU Total Multi_Reads(All_ExoGenus) Uniq_Reads(This_Genus) wTotal Sum_ReadLength Type Exo Genus Pvalue(Uniq) 296.9486 296.4078 162748.8732 6116 1745 4371 5127.566 451685 ALL_R1 bacteria Nocardia 0.0 3.5948 3.5883 1970.2279 105 49 56 62.074 7609 ALL_R1 bacteria Escherichia 1.89e-54 << 428.5503 427.7698 234875.8967 7400 0 7400 7400.000 545720 ALL_R1 viral Lymphocryptovirus 0.0 << 246.0252 245.1813 71473.7791 6070 3783 2287 4241.397 440514 ALL_R2 bacteria Nocardia 0.0 << 429.9383 428.4635 124903.1040 7412 0 7412 7412.000 543193 ALL_R2 viral Lymphocryptovirus 0.0 << 0.7386 0.7372 404.7800 48 46 2 12.753 3248 R1U bacteria Pseudomonas n/a 0.2847 0.2842 156.0338 8 6 2 4.916 594 R1U bacteria Nocardia n/a 0.0579 0.0578 31.7400 1 0 1 1.000 41 R1U bacteria Marinobacter n/a << 0.1158 0.1156 63.4800 2 0 2 2.000 118 R1U fungi Parastagonospora n/a 0.1158 0.1156 63.4800 2 0 2 2.000 113 R1U fungi Schizosaccharomyces n/a 0.0579 0.0578 31.7400 1 0 1 1.000 36 R1U fungi Wallemia n/a << 1.8532 1.8498 1015.6796 32 0 32 32.000 2269 R1U viral Lymphocryptovirus n/a << 0.2343 0.2335 68.0631 5 2 3 4.039 365 R2U bacteria Nocardia n/a 0.1306 0.1302 37.9495 5 4 1 2.252 271 R2U bacteria Nocardioides n/a 0.0580 0.0578 16.8515 1 0 1 1.000 50 R2U bacteria Exiguobacterium n/a 0.0580 0.0578 16.8515 1 0 1 1.000 42 R2U bacteria Echinicola n/a 0.0580 0.0578 16.8515 1 0 1 1.000 42 R2U bacteria Comamonas n/a 0.0580 0.0578 16.8515 1 0 1 1.000 38 R2U bacteria Nitrospirillum n/a 0.0580 0.0578 16.8515 1 0 1 1.000 38 R2U bacteria Frondihabitans n/a 0.0580 0.0578 16.8515 1 0 1 1.000 38 R2U bacteria Actinomyces n/a << 0.1740 0.1734 50.5544 3 0 3 3.000 166 R2U fungi Leptosphaeria n/a 0.1160 0.1156 33.7029 2 0 2 2.000 86 R2U fungi Lodderomyces n/a 0.1160 0.1156 33.7029 2 0 2 2.000 108 R2U fungi Parastagonospora n/a 0.1038 0.1034 30.1473 3 2 1 1.789 144 R2U fungi Aspergillus n/a 0.0661 0.0659 19.2107 2 1 1 1.140 117 R2U fungi Gaeumannomyces n/a 0.0580 0.0578 16.8515 1 0 1 1.000 59 R2U fungi Alternaria n/a 0.0580 0.0578 16.8515 1 0 1 1.000 54 R2U fungi Batrachochytrium n/a 0.0580 0.0578 16.8515 1 0 1 1.000 48 R2U fungi Histoplasma n/a 0.0580 0.0578 16.8515 1 0 1 1.000 48 R2U fungi Endocarpon n/a 0.0580 0.0578 16.8515 1 0 1 1.000 47 R2U fungi Capronia n/a 0.0580 0.0578 16.8515 1 0 1 1.000 44 R2U fungi Metarhizium n/a 0.0580 0.0578 16.8515 1 0 1 1.000 36 R2U fungi Schizosaccharomyces n/a << 2.0882 2.0810 606.6530 36 0 36 36.000 2567 R2U viral Lymphocryptovirus n/a