# 2020/03/24 12:07:36
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# SRR788692	Replication ID
# SRP000542	Sample ID
# SRR788692_1.filt	Read1
# SRR788692_2.filt	Read2
R1	       10183363 (100.0000%)	[A] Total raw reads
R1	        8438846 (82.8690%)	[B] Total reads after QC of (A)
R1		
R1	        8438846 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	       15470975 (91.6652%)	[B-3] Total mapped reads of (B-2)x2
R1	        1406717 (8.3348%)	[B-4] Total unmapped reads of (B-2)x2
R1	        7774398 (92.1263%)	[F] Total mapped reads of (B-2)
R1	         664448 (7.8737%)	[G] Total unmapped reads of (B-2)
R1	          71698 (0.8496%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        8367148 (99.1504%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           4003 (0.0474%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	       478.419	[I-3] RPMH of (I-1)
R1	       474.354	[I-4] PPM of (I-1)
R1	     55831.404	[I-5] RPMU of (I-1)
R1	             33 (0.0004%)	[I-6] Total chimeric reads of (I-1)
R1	         3.944	[I-7] RPMH of (I-6)
R1	         3.910	[I-8] PPM of (I-6)
R1	       460.264	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	       10183363 (100.0000%)	[A] Total raw reads
R2	        8438846 (82.8690%)	[B] Total reads after QC of (A)
R2		
R2	        8438846 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	       15470975 (91.6652%)	[B-3] Total mapped reads of (B-2)x2
R2	        1406717 (8.3348%)	[B-4] Total unmapped reads of (B-2)x2
R2	        7696577 (91.2041%)	[F] Total mapped reads of (B-2)
R2	         742269 (8.7959%)	[G] Total unmapped reads of (B-2)
R2	         101616 (1.2041%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        8337230 (98.7959%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           3968 (0.0470%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       475.938	[I-3] RPMH of (I-1)
R2	       470.206	[I-4] PPM of (I-1)
R2	     39048.969	[I-5] RPMU of (I-1)
R2	             34 (0.0004%)	[I-6] Total chimeric reads of (I-1)
R2	         4.078	[I-7] RPMH of (I-6)
R2	         4.029	[I-8] PPM of (I-6)
R2	       334.593	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
2.3757	2.3555	277.2462	40	32	8	19.878	2563	ALL_R1	bacteria	Alcanivorax	1.17e-07
<<
471.8454	467.8365	55064.2975	3948	0	3948	3948.000	343761	ALL_R1	viral	Lymphocryptovirus	0.0
<<
3.4493	3.4078	283.0066	57	45	12	28.758	3689	ALL_R2	bacteria	Alcanivorax	1.00e-18
<<
467.0616	461.4375	38320.7369	3894	0	3894	3894.000	343216	ALL_R2	viral	Lymphocryptovirus	0.0
<<
0.1195	0.1185	13.9474	1	0	1	1.000	50	R1U	bacteria	Leifsonia	n/a	
0.1195	0.1185	13.9474	1	0	1	1.000	37	R1U	bacteria	Elizabethkingia	n/a	
<<
3.4659	3.4365	404.4743	29	0	29	29.000	2376	R1U	viral	Lymphocryptovirus	n/a	
<<
0.1199	0.1185	9.8410	1	0	1	1.000	55	R2U	fungi	Malassezia	n/a	
<<
3.5983	3.5550	295.2291	30	0	30	30.000	2591	R2U	viral	Lymphocryptovirus	n/a