# 2020/03/23 10:13:04
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# SRR034932	Replication ID
# SRP000547	Sample ID
# SRR034932_1.filt	Read1
# SRR034932_2.filt	Read2
R1	       30990554 (100.0000%)	[A] Total raw reads
R1	       24162671 (77.9679%)	[B] Total reads after QC of (A)
R1		
R1	       24162671 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	       44653159 (92.4011%)	[B-3] Total mapped reads of (B-2)x2
R1	        3672183 (7.5989%)	[B-4] Total unmapped reads of (B-2)x2
R1	       22337312 (92.4455%)	[F] Total mapped reads of (B-2)
R1	        1825359 (7.5545%)	[G] Total unmapped reads of (B-2)
R1	         233789 (0.9676%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	       23928882 (99.0324%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	          69257 (0.2866%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      2894.285	[I-3] RPMH of (I-1)
R1	      2866.281	[I-4] PPM of (I-1)
R1	    296237.205	[I-5] RPMU of (I-1)
R1	            294 (0.0012%)	[I-6] Total chimeric reads of (I-1)
R1	        12.286	[I-7] RPMH of (I-6)
R1	        12.167	[I-8] PPM of (I-6)
R1	      1257.544	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	       30990554 (100.0000%)	[A] Total raw reads
R2	       24162671 (77.9679%)	[B] Total reads after QC of (A)
R2		
R2	       24162671 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	       44653159 (92.4011%)	[B-3] Total mapped reads of (B-2)x2
R2	        3672183 (7.5989%)	[B-4] Total unmapped reads of (B-2)x2
R2	       22315847 (92.3567%)	[F] Total mapped reads of (B-2)
R2	        1846824 (7.6433%)	[G] Total unmapped reads of (B-2)
R2	         237252 (0.9819%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	       23925419 (99.0181%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	          68744 (0.2845%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      2873.262	[I-3] RPMH of (I-1)
R2	      2845.050	[I-4] PPM of (I-1)
R2	    289750.982	[I-5] RPMU of (I-1)
R2	            253 (0.0010%)	[I-6] Total chimeric reads of (I-1)
R2	        10.575	[I-7] RPMH of (I-6)
R2	        10.471	[I-8] PPM of (I-6)
R2	      1066.377	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
20.1478	19.9528	2062.1757	607	191	416	482.114	41734	ALL_R1	bacteria	Escherichia	0.0
<<
2863.1245	2835.4220	293047.8722	68512	1	68511	68511.369	4410552	ALL_R1	viral	Lymphocryptovirus	0.0
<<
16.5124	16.3503	1665.1746	537	189	348	395.066	35710	ALL_R2	bacteria	Escherichia	1.42e-216
<<
2846.6114	2818.6607	287063.4178	68107	1	68106	68106.370	4472524	ALL_R2	viral	Lymphocryptovirus	0.0
<<
12.0775	11.9606	1236.1574	289	0	289	289.000	18355	R1U	viral	Lymphocryptovirus	n/a	
<<
10.4073	10.3052	1049.5170	249	0	249	249.000	15779	R2U	viral	Lymphocryptovirus	n/a