# 2020/03/23 04:27:04
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# SRR034928	Replication ID
# SRP000547	Sample ID
# SRR034928_1.filt	Read1
# SRR034928_2.filt	Read2
R1	       30007749 (100.0000%)	[A] Total raw reads
R1	        8220533 (27.3947%)	[B] Total reads after QC of (A)
R1		
R1	        8220533 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	       15389388 (93.6033%)	[B-3] Total mapped reads of (B-2)x2
R1	        1051678 (6.3967%)	[B-4] Total unmapped reads of (B-2)x2
R1	        7701260 (93.6832%)	[F] Total mapped reads of (B-2)
R1	         519273 (6.3168%)	[G] Total unmapped reads of (B-2)
R1	          38198 (0.4647%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        8182335 (99.5353%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	          12096 (0.1471%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      1478.307	[I-3] RPMH of (I-1)
R1	      1471.437	[I-4] PPM of (I-1)
R1	    316665.794	[I-5] RPMU of (I-1)
R1	             59 (0.0007%)	[I-6] Total chimeric reads of (I-1)
R1	         7.211	[I-7] RPMH of (I-6)
R1	         7.177	[I-8] PPM of (I-6)
R1	      1544.584	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	       30007749 (100.0000%)	[A] Total raw reads
R2	        8220533 (27.3947%)	[B] Total reads after QC of (A)
R2		
R2	        8220533 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	       15389388 (93.6033%)	[B-3] Total mapped reads of (B-2)x2
R2	        1051678 (6.3967%)	[B-4] Total unmapped reads of (B-2)x2
R2	        7688128 (93.5235%)	[F] Total mapped reads of (B-2)
R2	         532405 (6.4765%)	[G] Total unmapped reads of (B-2)
R2	          38888 (0.4731%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        8181645 (99.5269%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	          12003 (0.1460%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      1467.064	[I-3] RPMH of (I-1)
R2	      1460.124	[I-4] PPM of (I-1)
R2	    308655.626	[I-5] RPMU of (I-1)
R2	             54 (0.0007%)	[I-6] Total chimeric reads of (I-1)
R2	         6.600	[I-7] RPMH of (I-6)
R2	         6.569	[I-8] PPM of (I-6)
R2	      1388.603	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
1.7110	1.7031	366.5113	14	0	14	14.000	679	ALL_R1	fungi	Talaromyces	1.32e-04
<<
1467.0629	1460.2459	314257.2910	12004	0	12004	12004.000	632493	ALL_R1	viral	Lymphocryptovirus	0.0
<<
3.9371	3.9185	828.3275	65	52	13	32.212	3003	ALL_R2	bacteria	Alcanivorax	4.51e-06
<<
1455.9419	1449.0545	306315.5729	11912	0	11912	11912.000	628324	ALL_R2	viral	Lymphocryptovirus	0.0
<<
0.1222	0.1216	26.1794	1	0	1	1.000	49	R1U	fungi	Mitosporidium	n/a	
<<
6.9662	6.9339	1492.2247	57	0	57	57.000	2815	R1U	viral	Lymphocryptovirus	n/a	
<<
6.1112	6.0823	1285.7437	50	0	50	50.000	2655	R2U	viral	Lymphocryptovirus	n/a