# 2020/03/21 19:31:04
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR244989	Replication ID
# SRP000547	Sample ID
# ERR244989_1.filt	Read1
# ERR244989_2.filt	Read2
R1	        1692105 (100.0000%)	[A] Total raw reads
R1	        1659893 (98.0963%)	[B] Total reads after QC of (A)
R1		
R1	        1659893 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        3061320 (92.2144%)	[B-3] Total mapped reads of (B-2)x2
R1	         258466 (7.7856%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1539757 (92.7624%)	[F] Total mapped reads of (B-2)
R1	         120136 (7.2376%)	[G] Total unmapped reads of (B-2)
R1	          12730 (0.7669%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        1647163 (99.2331%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	            843 (0.0508%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	       511.789	[I-3] RPMH of (I-1)
R1	       507.864	[I-4] PPM of (I-1)
R1	     66221.524	[I-5] RPMU of (I-1)
R1	              1 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R1	         0.607	[I-7] RPMH of (I-6)
R1	         0.602	[I-8] PPM of (I-6)
R1	        78.555	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        1692105 (100.0000%)	[A] Total raw reads
R2	        1659893 (98.0963%)	[B] Total reads after QC of (A)
R2		
R2	        1659893 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        3061320 (92.2144%)	[B-3] Total mapped reads of (B-2)x2
R2	         258466 (7.7856%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1521563 (91.6663%)	[F] Total mapped reads of (B-2)
R2	         138330 (8.3337%)	[G] Total unmapped reads of (B-2)
R2	          20039 (1.2072%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1639854 (98.7928%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	            855 (0.0515%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       521.388	[I-3] RPMH of (I-1)
R2	       515.093	[I-4] PPM of (I-1)
R2	     42666.800	[I-5] RPMU of (I-1)
R2	              1 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R2	         0.610	[I-7] RPMH of (I-6)
R2	         0.602	[I-8] PPM of (I-6)
R2	        49.903	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
511.1820	507.2616	66142.9694	842	0	842	842.000	83936	ALL_R1	viral	Lymphocryptovirus	0.0
<<
521.3879	515.0934	42666.7997	855	0	855	855.000	85394	ALL_R2	viral	Lymphocryptovirus	0.0
<<
0.6071	0.6024	78.5546	1	0	1	1.000	100	R1U	viral	Lymphocryptovirus	n/a	
<<
0.6098	0.6024	49.9027	1	0	1	1.000	100	R2U	viral	Lymphocryptovirus	n/a