# 2020/03/17 21:13:39
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR244899	Replication ID
# SRP000547	Sample ID
# ERR244899_1.filt	Read1
# ERR244899_2.filt	Read2
R1	        1647806 (100.0000%)	[A] Total raw reads
R1	        1618883 (98.2448%)	[B] Total reads after QC of (A)
R1		
R1	        1618883 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        2958246 (91.3669%)	[B-3] Total mapped reads of (B-2)x2
R1	         279520 (8.6331%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1487352 (91.8752%)	[F] Total mapped reads of (B-2)
R1	         131531 (8.1248%)	[G] Total unmapped reads of (B-2)
R1	          30961 (1.9125%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        1587922 (98.0875%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	          17769 (1.0976%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	     11190.096	[I-3] RPMH of (I-1)
R1	     10976.087	[I-4] PPM of (I-1)
R1	    573915.571	[I-5] RPMU of (I-1)
R1	             32 (0.0020%)	[I-6] Total chimeric reads of (I-1)
R1	        20.152	[I-7] RPMH of (I-6)
R1	        19.767	[I-8] PPM of (I-6)
R1	      1033.558	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        1647806 (100.0000%)	[A] Total raw reads
R2	        1618883 (98.2448%)	[B] Total reads after QC of (A)
R2		
R2	        1618883 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        2958246 (91.3669%)	[B-3] Total mapped reads of (B-2)x2
R2	         279520 (8.6331%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1470894 (90.8586%)	[F] Total mapped reads of (B-2)
R2	         147989 (9.1414%)	[G] Total unmapped reads of (B-2)
R2	          37408 (2.3107%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1581475 (97.6893%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	          17563 (1.0849%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	     11105.455	[I-3] RPMH of (I-1)
R2	     10848.838	[I-4] PPM of (I-1)
R2	    469498.503	[I-5] RPMU of (I-1)
R2	             34 (0.0021%)	[I-6] Total chimeric reads of (I-1)
R2	        21.499	[I-7] RPMH of (I-6)
R2	        21.002	[I-8] PPM of (I-6)
R2	       908.897	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
11189.4665	10975.4689	573883.2725	17768	0	17768	17768.000	1771872	ALL_R1	viral	Lymphocryptovirus	0.0
<<
11104.1907	10847.6029	469445.0385	17561	0	17561	17561.000	1750811	ALL_R2	viral	Lymphocryptovirus	0.0
<<
20.1521	19.7667	1033.5583	32	0	32	32.000	3194	R1U	viral	Lymphocryptovirus	n/a	
<<
21.4989	21.0021	908.8965	34	0	34	34.000	3389	R2U	viral	Lymphocryptovirus	n/a