# 2020/03/20 09:23:36
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR244875	Replication ID
# SRP000547	Sample ID
# ERR244875_1.filt	Read1
# ERR244875_2.filt	Read2
R1	        2129299 (100.0000%)	[A] Total raw reads
R1	        2087151 (98.0206%)	[B] Total reads after QC of (A)
R1		
R1	        2087151 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        3873600 (92.7964%)	[B-3] Total mapped reads of (B-2)x2
R1	         300702 (7.2036%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1947435 (93.3059%)	[F] Total mapped reads of (B-2)
R1	         139716 (6.6941%)	[G] Total unmapped reads of (B-2)
R1	          13707 (0.6567%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        2073444 (99.3433%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	            950 (0.0455%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	       458.175	[I-3] RPMH of (I-1)
R1	       455.166	[I-4] PPM of (I-1)
R1	     69307.653	[I-5] RPMU of (I-1)
R1	              3 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R1	         1.447	[I-7] RPMH of (I-6)
R1	         1.437	[I-8] PPM of (I-6)
R1	       218.866	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        2129299 (100.0000%)	[A] Total raw reads
R2	        2087151 (98.0206%)	[B] Total reads after QC of (A)
R2		
R2	        2087151 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        3873600 (92.7964%)	[B-3] Total mapped reads of (B-2)x2
R2	         300702 (7.2036%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1926165 (92.2868%)	[F] Total mapped reads of (B-2)
R2	         160986 (7.7132%)	[G] Total unmapped reads of (B-2)
R2	          22479 (1.0770%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        2064672 (98.9230%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	            929 (0.0445%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       449.950	[I-3] RPMH of (I-1)
R2	       445.104	[I-4] PPM of (I-1)
R2	     41327.461	[I-5] RPMU of (I-1)
R2	              2 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R2	         0.969	[I-7] RPMH of (I-6)
R2	         0.958	[I-8] PPM of (I-6)
R2	        88.972	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
457.6926	454.6868	69234.6976	949	0	949	949.000	94607	ALL_R1	viral	Lymphocryptovirus	0.0
<<
448.9817	444.1461	41238.4893	927	0	927	927.000	92476	ALL_R2	viral	Lymphocryptovirus	0.0
<<
1.4469	1.4374	218.8663	3	0	3	3.000	300	R1U	viral	Lymphocryptovirus	n/a	
<<
0.9687	0.9582	88.9719	2	0	2	2.000	200	R2U	viral	Lymphocryptovirus	n/a