# 2018/02/05 17:18:31 # HUMAN Target (Host) organism # RNA Sequencing source # ENCSR000AHH_1 Replication ID # ENCSR000AHH Sample ID # ENCFF001RTS Read1 # ENCFF001RTR Read2 R1 156515668 (100.0000%) [A] Total raw reads R1 150223851 (95.9801%) [B] Total reads after QC of (A) R1 R1 150223851 (100.0000%) [B-2] Total reads of (B) passed to HISAT2 R1 284313893 (94.6301%) [B-3] Total mapped reads of (B-2)x2 R1 16133809 (5.3699%) [B-4] Total unmapped reads of (B-2)x2 R1 142750355 (95.0251%) [F] Total mapped reads of (B-2) R1 7473496 (4.9749%) [G] Total unmapped reads of (B-2) R1 3731071 (2.4837%) [H] Total unmapped reads of (B-2) after running BLASTn with (G) R1 146492780 (97.5163%) [J] Total mapped reads to host genome ( (B-2)-H) R1 2511452 (1.6718%) [I-1] Total mapped reads of (H) to exo. genomes R1 17143.862 [I-3] RPMH of (I-1) R1 16718.064 [I-4] PPM of (I-1) R1 2796 (0.0019%) [I-5] Total chimeric reads of (I-1) R1 19.086 [I-7] RPMH of (I-5) R1 18.612 [I-8] PPM of (I-5) R1 ## ----------------------------------------- R2 156515668 (100.0000%) [A] Total raw reads R2 150223851 (95.9801%) [B] Total reads after QC of (A) R2 R2 150223851 (100.0000%) [B-2] Total reads of (B) passed to HISAT2 R2 284313893 (94.6301%) [B-3] Total mapped reads of (B-2)x2 R2 16133809 (5.3699%) [B-4] Total unmapped reads of (B-2)x2 R2 141563538 (94.2351%) [F] Total mapped reads of (B-2) R2 8660313 (5.7649%) [G] Total unmapped reads of (B-2) R2 4244270 (2.8253%) [H] Total unmapped reads of (B-2) after running BLASTn with (G) R2 145979581 (97.1747%) [J] Total mapped reads to host genome ( (B-2)-H) R2 2509218 (1.6703%) [I-1] Total mapped reads of (H) to exo. genomes R2 17188.829 [I-3] RPMH of (I-1) R2 16703.193 [I-4] PPM of (I-1) R2 1288 (0.0009%) [I-5] Total chimeric reads of (I-1) R2 8.823 [I-7] RPMH of (I-5) R2 8.574 [I-8] PPM of (I-5) R2 ## ----------------------------------------- ##=============================================## # List threshold of RPMH > 1 # List threshold of P-value < 0.001 # RPMH PPM Total Multi_Reads(All_ExoGenus) Uniq_Reads(This_Genus) wTotal Sum_ReadLength Type Exo Genus Pvalue(Uniq) 1185.2409 1155.8033 192863 101631 91232 173629.229 18633101 ALL_R1 bacteria Bosea 0.0 601.4323 586.4947 106028 91748 14280 88105.495 10256516 ALL_R1 bacteria Methylobacterium 0.0 518.9802 506.0904 77418 1967 75451 76026.847 7684881 ALL_R1 bacteria Bacillus 0.0 257.9975 251.5897 52166 41853 10313 37794.770 5056880 ALL_R1 bacteria Variovorax 0.0 241.1916 235.2012 48687 38764 9923 35332.825 4741437 ALL_R1 bacteria Xenophilus 0.0 181.3919 176.8867 38168 31953 6215 26572.600 3709865 ALL_R1 bacteria Pseudacidovorax 0.0 126.3523 123.2141 32155 30884 1271 18509.697 3108420 ALL_R1 bacteria Acidovorax 3.49e-20 104.4732 101.8785 25895 23764 2131 15304.575 2508338 ALL_R1 bacteria Pseudorhodoferax 1.87e-117 67.2650 65.5944 12001 6051 5950 9853.842 1166309 ALL_R1 bacteria Escherichia 0.0 << 4828.2813 4708.3626 2089368 2089367 1 707308.356 206786794 ALL_R1 viral Phix174microvirus n/a << 1170.8585 1137.7783 192202 101936 90266 170921.436 18113591 ALL_R2 bacteria Bosea 0.0 589.3731 572.7216 105661 91598 14063 86036.445 9975242 ALL_R2 bacteria Methylobacterium 0.0 527.5222 512.6182 77894 1234 76660 77007.475 7684421 ALL_R2 bacteria Bacillus 0.0 253.8985 246.7251 52716 42362 10354 37064.000 5001649 ALL_R2 bacteria Variovorax 0.0 234.0113 227.3998 48558 38783 9775 34160.876 4638288 ALL_R2 bacteria Xenophilus 0.0 176.2650 171.2850 38253 32124 6129 25731.091 3649914 ALL_R2 bacteria Pseudacidovorax 0.0 122.6545 119.1891 32578 31249 1329 17905.048 3081593 ALL_R2 bacteria Acidovorax 2.13e-25 104.1936 101.2498 26894 24774 2120 15210.138 2553668 ALL_R2 bacteria Pseudorhodoferax 9.13e-116 << 4865.8112 4728.3376 2075113 2075109 4 710309.087 202645371 ALL_R2 viral Phix174microvirus n/a << 5.1662 5.0379 2243 2241 2 756.808 148289 R1U bacteria Pseudomonas n/a TTN(366);TTN-AS1(241);RYR2(47);MYH7(26);SLC8A1(14) 5.1606 5.0324 2232 2231 1 755.994 147104 R1U bacteria Mesorhizobium n/a TTN(364);TTN-AS1(240);RYR2(45);MYH7(26);SLC8A1(15) 1.6410 1.6002 271 154 117 240.391 19767 R1U bacteria Bosea n/a TTN(50);TTN-AS1(29);RYR2(7);MYOM1(3);INPP4B(3) << 2.0700 2.0115 887 886 1 302.182 53498 R2U bacteria Pseudomonas n/a TTN(111);TTN-AS1(72);MYH7(25);RYR2(14);RN7SL2(11)