# 2020/03/27 17:01:41
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR243945	Replication ID
# SRP000547	Sample ID
# ERR243945_1.filt	Read1
# ERR243945_2.filt	Read2
R1	        1666484 (100.0000%)	[A] Total raw reads
R1	        1634804 (98.0990%)	[B] Total reads after QC of (A)
R1		
R1	        1634804 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        3008797 (92.0232%)	[B-3] Total mapped reads of (B-2)x2
R1	         260811 (7.9768%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1517467 (92.8226%)	[F] Total mapped reads of (B-2)
R1	         117337 (7.1774%)	[G] Total unmapped reads of (B-2)
R1	          16382 (1.0021%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        1618422 (98.9979%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           5618 (0.3436%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      3471.282	[I-3] RPMH of (I-1)
R1	      3436.498	[I-4] PPM of (I-1)
R1	    342937.370	[I-5] RPMU of (I-1)
R1	              9 (0.0006%)	[I-6] Total chimeric reads of (I-1)
R1	         5.561	[I-7] RPMH of (I-6)
R1	         5.505	[I-8] PPM of (I-6)
R1	       549.384	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        1666484 (100.0000%)	[A] Total raw reads
R2	        1634804 (98.0990%)	[B] Total reads after QC of (A)
R2		
R2	        1634804 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        3008797 (92.0232%)	[B-3] Total mapped reads of (B-2)x2
R2	         260811 (7.9768%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1491330 (91.2238%)	[F] Total mapped reads of (B-2)
R2	         143474 (8.7762%)	[G] Total unmapped reads of (B-2)
R2	          26228 (1.6044%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1608576 (98.3956%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           5508 (0.3369%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      3424.147	[I-3] RPMH of (I-1)
R2	      3369.211	[I-4] PPM of (I-1)
R2	    210004.575	[I-5] RPMU of (I-1)
R2	              9 (0.0006%)	[I-6] Total chimeric reads of (I-1)
R2	         5.595	[I-7] RPMH of (I-6)
R2	         5.505	[I-8] PPM of (I-6)
R2	       343.145	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
3470.0467	3435.2742	342815.2851	5616	0	5616	5616.000	560321	ALL_R1	viral	Lymphocryptovirus	0.0
<<
3423.5249	3368.5995	209966.4481	5507	0	5507	5507.000	548744	ALL_R2	viral	Lymphocryptovirus	0.0
<<
5.5610	5.5052	549.3835	9	0	9	9.000	899	R1U	viral	Lymphocryptovirus	n/a	
<<
5.5950	5.5052	343.1447	9	0	9	9.000	897	R2U	viral	Lymphocryptovirus	n/a