# 2020/03/25 05:33:07
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR243940	Replication ID
# SRP000547	Sample ID
# ERR243940_1.filt	Read1
# ERR243940_2.filt	Read2
R1	        1829301 (100.0000%)	[A] Total raw reads
R1	        1794899 (98.1194%)	[B] Total reads after QC of (A)
R1		
R1	        1794899 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        3312701 (92.2810%)	[B-3] Total mapped reads of (B-2)x2
R1	         277097 (7.7190%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1670036 (93.0435%)	[F] Total mapped reads of (B-2)
R1	         124863 (6.9565%)	[G] Total unmapped reads of (B-2)
R1	          21174 (1.1797%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        1773725 (98.8203%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           9260 (0.5159%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      5220.651	[I-3] RPMH of (I-1)
R1	      5159.065	[I-4] PPM of (I-1)
R1	    437328.799	[I-5] RPMU of (I-1)
R1	             12 (0.0007%)	[I-6] Total chimeric reads of (I-1)
R1	         6.765	[I-7] RPMH of (I-6)
R1	         6.686	[I-8] PPM of (I-6)
R1	       566.733	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        1829301 (100.0000%)	[A] Total raw reads
R2	        1794899 (98.1194%)	[B] Total reads after QC of (A)
R2		
R2	        1794899 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        3312701 (92.2810%)	[B-3] Total mapped reads of (B-2)x2
R2	         277097 (7.7190%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1642665 (91.5185%)	[F] Total mapped reads of (B-2)
R2	         152234 (8.4815%)	[G] Total unmapped reads of (B-2)
R2	          31813 (1.7724%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1763086 (98.2276%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           9102 (0.5071%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      5162.539	[I-3] RPMH of (I-1)
R2	      5071.037	[I-4] PPM of (I-1)
R2	    286109.452	[I-5] RPMU of (I-1)
R2	              9 (0.0005%)	[I-6] Total chimeric reads of (I-1)
R2	         5.105	[I-7] RPMH of (I-6)
R2	         5.014	[I-8] PPM of (I-6)
R2	       282.903	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
5218.3963	5156.8361	437139.8885	9256	0	9256	9256.000	923459	ALL_R1	viral	Lymphocryptovirus	0.0
<<
5161.9717	5070.4803	286078.0184	9101	0	9101	9101.000	907046	ALL_R2	viral	Lymphocryptovirus	0.0
<<
6.7654	6.6856	566.7328	12	0	12	12.000	1197	R1U	viral	Lymphocryptovirus	n/a	
<<
5.1047	5.0142	282.9032	9	0	9	9.000	898	R2U	viral	Lymphocryptovirus	n/a