# 2020/03/21 15:12:04
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR243864	Replication ID
# SRP000547	Sample ID
# ERR243864_1.filt	Read1
# ERR243864_2.filt	Read2
R1	        1474060 (100.0000%)	[A] Total raw reads
R1	        1442553 (97.8626%)	[B] Total reads after QC of (A)
R1		
R1	        1442553 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        2656802 (92.0868%)	[B-3] Total mapped reads of (B-2)x2
R1	         228304 (7.9132%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1337643 (92.7275%)	[F] Total mapped reads of (B-2)
R1	         104910 (7.2725%)	[G] Total unmapped reads of (B-2)
R1	          11169 (0.7743%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        1431384 (99.2257%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	            760 (0.0527%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	       530.955	[I-3] RPMH of (I-1)
R1	       526.844	[I-4] PPM of (I-1)
R1	     68045.483	[I-5] RPMU of (I-1)
R1	              2 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R1	         1.397	[I-7] RPMH of (I-6)
R1	         1.386	[I-8] PPM of (I-6)
R1	       179.067	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        1474060 (100.0000%)	[A] Total raw reads
R2	        1442553 (97.8626%)	[B] Total reads after QC of (A)
R2		
R2	        1442553 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        2656802 (92.0868%)	[B-3] Total mapped reads of (B-2)x2
R2	         228304 (7.9132%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1319159 (91.4461%)	[F] Total mapped reads of (B-2)
R2	         123394 (8.5539%)	[G] Total unmapped reads of (B-2)
R2	          18180 (1.2603%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1424373 (98.7397%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	            725 (0.0503%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       508.996	[I-3] RPMH of (I-1)
R2	       502.581	[I-4] PPM of (I-1)
R2	     39878.988	[I-5] RPMU of (I-1)
R2	              1 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R2	         0.702	[I-7] RPMH of (I-6)
R2	         0.693	[I-8] PPM of (I-6)
R2	        55.006	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
529.5574	525.4573	67866.4160	758	0	758	758.000	75642	ALL_R1	viral	Lymphocryptovirus	0.0
<<
1.4041	1.3864	110.0110	2	0	2	2.000	198	ALL_R2	bacteria	Alcanivorax	2.47e-06
<<
507.5918	501.1948	39768.9769	723	0	723	723.000	72191	ALL_R2	viral	Lymphocryptovirus	0.0
<<
1.3972	1.3864	179.0671	2	0	2	2.000	200	R1U	viral	Lymphocryptovirus	n/a	
<<
0.7021	0.6932	55.0055	1	0	1	1.000	100	R2U	viral	Lymphocryptovirus	n/a