# 2020/03/27 12:36:05
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR243676	Replication ID
# SRP000547	Sample ID
# ERR243676_1.filt	Read1
# ERR243676_2.filt	Read2
R1	        1800709 (100.0000%)	[A] Total raw reads
R1	        1766855 (98.1200%)	[B] Total reads after QC of (A)
R1		
R1	        1766855 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        3251650 (92.0180%)	[B-3] Total mapped reads of (B-2)x2
R1	         282060 (7.9820%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1641071 (92.8809%)	[F] Total mapped reads of (B-2)
R1	         125784 (7.1191%)	[G] Total unmapped reads of (B-2)
R1	          17639 (0.9983%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        1749216 (99.0017%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           6094 (0.3449%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      3483.847	[I-3] RPMH of (I-1)
R1	      3449.066	[I-4] PPM of (I-1)
R1	    345484.438	[I-5] RPMU of (I-1)
R1	             17 (0.0010%)	[I-6] Total chimeric reads of (I-1)
R1	         9.719	[I-7] RPMH of (I-6)
R1	         9.622	[I-8] PPM of (I-6)
R1	       963.774	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        1800709 (100.0000%)	[A] Total raw reads
R2	        1766855 (98.1200%)	[B] Total reads after QC of (A)
R2		
R2	        1766855 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        3251650 (92.0180%)	[B-3] Total mapped reads of (B-2)x2
R2	         282060 (7.9820%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1610579 (91.1551%)	[F] Total mapped reads of (B-2)
R2	         156276 (8.8449%)	[G] Total unmapped reads of (B-2)
R2	          29884 (1.6914%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1736971 (98.3086%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           5995 (0.3393%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      3451.411	[I-3] RPMH of (I-1)
R2	      3393.034	[I-4] PPM of (I-1)
R2	    200609.022	[I-5] RPMU of (I-1)
R2	              7 (0.0004%)	[I-6] Total chimeric reads of (I-1)
R2	         4.030	[I-7] RPMH of (I-6)
R2	         3.962	[I-8] PPM of (I-6)
R2	       234.239	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
3483.8465	3449.0663	345484.4379	6094	0	6094	6094.000	607689	ALL_R1	viral	Lymphocryptovirus	0.0
<<
3450.8348	3392.4685	200575.5588	5994	0	5994	5994.000	597447	ALL_R2	viral	Lymphocryptovirus	0.0
<<
9.7186	9.6216	963.7735	17	0	17	17.000	1697	R1U	viral	Lymphocryptovirus	n/a	
<<
3.4543	3.3959	200.7763	6	0	6	6.000	599	R2U	viral	Lymphocryptovirus	n/a	
0.5757	0.5660	33.4627	1	0	1	1.000	98	R2U	viral	Phix174microvirus	n/a