# 2020/03/17 05:59:35
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR243375	Replication ID
# SRP000547	Sample ID
# ERR243375_1.filt	Read1
# ERR243375_2.filt	Read2
R1	        1761329 (100.0000%)	[A] Total raw reads
R1	        1729757 (98.2075%)	[B] Total reads after QC of (A)
R1		
R1	        1729757 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        3166810 (91.5392%)	[B-3] Total mapped reads of (B-2)x2
R1	         292704 (8.4608%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1591966 (92.0341%)	[F] Total mapped reads of (B-2)
R1	         137791 (7.9659%)	[G] Total unmapped reads of (B-2)
R1	          32355 (1.8705%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        1697402 (98.1295%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	          18634 (1.0773%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	     10977.953	[I-3] RPMH of (I-1)
R1	     10772.611	[I-4] PPM of (I-1)
R1	    575923.350	[I-5] RPMU of (I-1)
R1	             42 (0.0024%)	[I-6] Total chimeric reads of (I-1)
R1	        24.744	[I-7] RPMH of (I-6)
R1	        24.281	[I-8] PPM of (I-6)
R1	      1298.099	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        1761329 (100.0000%)	[A] Total raw reads
R2	        1729757 (98.2075%)	[B] Total reads after QC of (A)
R2		
R2	        1729757 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        3166810 (91.5392%)	[B-3] Total mapped reads of (B-2)x2
R2	         292704 (8.4608%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1574844 (91.0442%)	[F] Total mapped reads of (B-2)
R2	         154913 (8.9558%)	[G] Total unmapped reads of (B-2)
R2	          39065 (2.2584%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1690692 (97.7416%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	          18386 (1.0629%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	     10874.837	[I-3] RPMH of (I-1)
R2	     10629.239	[I-4] PPM of (I-1)
R2	    470651.478	[I-5] RPMU of (I-1)
R2	             40 (0.0023%)	[I-6] Total chimeric reads of (I-1)
R2	        23.659	[I-7] RPMH of (I-6)
R2	        23.125	[I-8] PPM of (I-6)
R2	      1023.934	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
10977.3642	10772.0333	575892.4432	18633	0	18633	18633.000	1858508	ALL_R1	viral	Lymphocryptovirus	0.0
<<
10874.2456	10628.6606	470625.8799	18385	0	18385	18385.000	1833453	ALL_R2	viral	Lymphocryptovirus	0.0
<<
24.1546	23.7028	1267.1921	41	0	41	41.000	4086	R1U	viral	Lymphocryptovirus	n/a	
<<
23.6590	23.1246	1023.9345	40	0	40	40.000	3986	R2U	viral	Lymphocryptovirus	n/a