# 2020/03/24 17:57:03
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR243356	Replication ID
# SRP000547	Sample ID
# ERR243356_1.filt	Read1
# ERR243356_2.filt	Read2
R1	        1932458 (100.0000%)	[A] Total raw reads
R1	        1897217 (98.1764%)	[B] Total reads after QC of (A)
R1		
R1	        1897217 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        3526895 (92.9492%)	[B-3] Total mapped reads of (B-2)x2
R1	         267539 (7.0508%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1773038 (93.4547%)	[F] Total mapped reads of (B-2)
R1	         124179 (6.5453%)	[G] Total unmapped reads of (B-2)
R1	          21782 (1.1481%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        1875435 (98.8519%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	          10100 (0.5324%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      5385.417	[I-3] RPMH of (I-1)
R1	      5323.587	[I-4] PPM of (I-1)
R1	    463685.612	[I-5] RPMU of (I-1)
R1	             11 (0.0006%)	[I-6] Total chimeric reads of (I-1)
R1	         5.865	[I-7] RPMH of (I-6)
R1	         5.798	[I-8] PPM of (I-6)
R1	       505.004	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        1932458 (100.0000%)	[A] Total raw reads
R2	        1897217 (98.1764%)	[B] Total reads after QC of (A)
R2		
R2	        1897217 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        3526895 (92.9492%)	[B-3] Total mapped reads of (B-2)x2
R2	         267539 (7.0508%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1753857 (92.4437%)	[F] Total mapped reads of (B-2)
R2	         143360 (7.5563%)	[G] Total unmapped reads of (B-2)
R2	          28946 (1.5257%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1868271 (98.4743%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           9951 (0.5245%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      5326.315	[I-3] RPMH of (I-1)
R2	      5245.051	[I-4] PPM of (I-1)
R2	    343778.070	[I-5] RPMU of (I-1)
R2	             10 (0.0005%)	[I-6] Total chimeric reads of (I-1)
R2	         5.352	[I-7] RPMH of (I-6)
R2	         5.271	[I-8] PPM of (I-6)
R2	       345.471	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
5384.3508	5322.5330	463593.7930	10098	0	10098	10098.000	1007281	ALL_R1	viral	Lymphocryptovirus	0.0
<<
5325.7798	5244.5240	343743.5224	9950	0	9950	9950.000	992253	ALL_R2	viral	Lymphocryptovirus	0.0
<<
5.8653	5.7980	505.0041	11	0	11	11.000	1098	R1U	viral	Lymphocryptovirus	n/a	
<<
5.3525	5.2709	345.4709	10	0	10	10.000	999	R2U	viral	Lymphocryptovirus	n/a