# 2018/02/08 05:14:00 # HUMAN Target (Host) organism # RNA Sequencing source # ENCSR000CUG_1 Replication ID # ENCSR000CUG Sample ID # ENCFF000GNB Read1 # ENCFF000GNG Read2 R1 132793805 (100.0000%) [A] Total raw reads R1 129828532 (97.7670%) [B] Total reads after QC of (A) R1 R1 129828532 (100.0000%) [B-2] Total reads of (B) passed to HISAT2 R1 241770184 (93.1113%) [B-3] Total mapped reads of (B-2)x2 R1 17886880 (6.8887%) [B-4] Total unmapped reads of (B-2)x2 R1 121069830 (93.2536%) [F] Total mapped reads of (B-2) R1 8758702 (6.7464%) [G] Total unmapped reads of (B-2) R1 4473142 (3.4454%) [H] Total unmapped reads of (B-2) after running BLASTn with (G) R1 125355390 (96.5546%) [J] Total mapped reads to host genome ( (B-2)-H) R1 2572052 (1.9811%) [I-1] Total mapped reads of (H) to exo. genomes R1 20518.081 [I-3] RPMH of (I-1) R1 19811.146 [I-4] PPM of (I-1) R1 726 (0.0006%) [I-5] Total chimeric reads of (I-1) R1 5.792 [I-7] RPMH of (I-5) R1 5.592 [I-8] PPM of (I-5) R1 ## ----------------------------------------- R2 132793805 (100.0000%) [A] Total raw reads R2 129828532 (97.7670%) [B] Total reads after QC of (A) R2 R2 129828532 (100.0000%) [B-2] Total reads of (B) passed to HISAT2 R2 241770184 (93.1113%) [B-3] Total mapped reads of (B-2)x2 R2 17886880 (6.8887%) [B-4] Total unmapped reads of (B-2)x2 R2 120700354 (92.9691%) [F] Total mapped reads of (B-2) R2 9128178 (7.0309%) [G] Total unmapped reads of (B-2) R2 4597438 (3.5412%) [H] Total unmapped reads of (B-2) after running BLASTn with (G) R2 125231094 (96.4588%) [J] Total mapped reads to host genome ( (B-2)-H) R2 2578421 (1.9860%) [I-1] Total mapped reads of (H) to exo. genomes R2 20589.304 [I-3] RPMH of (I-1) R2 19860.203 [I-4] PPM of (I-1) R2 667 (0.0005%) [I-5] Total chimeric reads of (I-1) R2 5.326 [I-7] RPMH of (I-5) R2 5.138 [I-8] PPM of (I-5) R2 ## ----------------------------------------- ##=============================================## # List threshold of RPMH > 1 # List threshold of P-value < 0.001 # RPMH PPM Total Multi_Reads(All_ExoGenus) Uniq_Reads(This_Genus) wTotal Sum_ReadLength Type Exo Genus Pvalue(Uniq) 2825.6384 2728.2832 399315 208904 190411 354209.004 38192285 ALL_R1 bacteria Bosea 0.0 1510.5434 1458.4988 231196 190328 40868 189354.760 22146167 ALL_R1 bacteria Methylobacterium 0.0 1110.6095 1072.3443 142490 5210 137280 139220.892 14208989 ALL_R1 bacteria Bacillus 0.0 21.3221 20.5874 3578 1129 2449 2672.837 356998 ALL_R1 bacteria Staphylococcus 1.23e-202 << 667.0768 644.0932 85784 5929 79855 83621.674 8511451 ALL_R1 fungi Saccharomyces 0.0 << 2893.2164 2790.7630 407339 215673 191666 362320.657 37896374 ALL_R2 bacteria Bosea 0.0 1558.2223 1503.0432 236859 195795 41064 195137.886 22073469 ALL_R2 bacteria Methylobacterium 0.0 1122.3090 1082.5662 143040 4402 138638 140547.979 14211961 ALL_R2 bacteria Bacillus 0.0 120.1271 115.8732 17883 8986 8897 15043.651 1732913 ALL_R2 bacteria Escherichia 0.0 21.1987 20.4480 3507 1063 2444 2654.737 348603 ALL_R2 bacteria Staphylococcus 1.48e-199 << 667.8077 644.1595 85844 6275 79569 83630.286 8536194 ALL_R2 fungi Saccharomyces 0.0 << 4232.5550 4082.6734 1822078 1822077 1 530047.493 179009476 ALL_R2 viral Phix174microvirus n/a << 2.7125 2.6191 393 230 163 340.028 36926 R1U bacteria Bosea n/a RNR2(34);RN7SL1(17);RN7SL2(17);THBS1(8);HSPG2(8) 1.4969 1.4453 238 205 33 187.641 22469 R1U bacteria Methylobacterium n/a RNR2(21);RN7SL1(13);RN7SL2(9);FSTL1(5);ELMO2(5) 1.3083 1.2633 174 13 161 164.006 17194 R1U bacteria Bacillus n/a RN7SL2(13);RN7SL1(13);RNR2(8);FAR1(6);CCT5(5) << 2.4180 2.3324 346 178 168 302.815 31296 R2U bacteria Bosea n/a RN7SL2(54);RNR2(35);THBS1(8);ETS1(7);TAX1BP1(5) 1.2027 1.1601 155 7 148 150.617 15175 R2U bacteria Bacillus n/a RN7SL2(11);EIF4EBP2(6);ANKRD42(6);HIST1H2BG(6);FAM49A(5) 1.1764 1.1347 188 159 29 147.318 17254 R2U bacteria Methylobacterium n/a RN7SL2(23);RNR2(23);ETS1(7);THBS1(6);TAX1BP1(5)