# 2020/03/21 03:35:04
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR243185	Replication ID
# SRP000547	Sample ID
# ERR243185_1.filt	Read1
# ERR243185_2.filt	Read2
R1	        1715200 (100.0000%)	[A] Total raw reads
R1	        1683217 (98.1353%)	[B] Total reads after QC of (A)
R1		
R1	        1683217 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        3099197 (92.0617%)	[B-3] Total mapped reads of (B-2)x2
R1	         267237 (7.9383%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1560051 (92.6827%)	[F] Total mapped reads of (B-2)
R1	         123166 (7.3173%)	[G] Total unmapped reads of (B-2)
R1	          12901 (0.7664%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        1670316 (99.2336%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	            865 (0.0514%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	       517.866	[I-3] RPMH of (I-1)
R1	       513.897	[I-4] PPM of (I-1)
R1	     67049.066	[I-5] RPMU of (I-1)
R1	              1 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R1	         0.599	[I-7] RPMH of (I-6)
R1	         0.594	[I-8] PPM of (I-6)
R1	        77.513	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        1715200 (100.0000%)	[A] Total raw reads
R2	        1683217 (98.1353%)	[B] Total reads after QC of (A)
R2		
R2	        1683217 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        3099197 (92.0617%)	[B-3] Total mapped reads of (B-2)x2
R2	         267237 (7.9383%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1539146 (91.4407%)	[F] Total mapped reads of (B-2)
R2	         144071 (8.5593%)	[G] Total unmapped reads of (B-2)
R2	          21136 (1.2557%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1662081 (98.7443%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	            854 (0.0507%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       513.814	[I-3] RPMH of (I-1)
R2	       507.362	[I-4] PPM of (I-1)
R2	     40404.996	[I-5] RPMU of (I-1)
R2	              1 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R2	         0.602	[I-7] RPMH of (I-6)
R2	         0.594	[I-8] PPM of (I-6)
R2	        47.313	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
1.7961	1.7823	232.5401	3	0	3	3.000	298	ALL_R1	bacteria	Alcanivorax	1.41e-09
0.5987	0.5941	77.5134	1	0	1	1.000	100	ALL_R1	bacteria	Sphingomonas	4.20e-04
<<
514.2739	510.3323	66583.9857	859	0	859	859.000	85704	ALL_R1	viral	Lymphocryptovirus	0.0
<<
2.2484	2.2202	176.8073	5	2	3	3.737	494	ALL_R2	bacteria	Alcanivorax	8.30e-10
0.6017	0.5941	47.3126	1	0	1	1.000	100	ALL_R2	bacteria	Sphingomonas	3.54e-04
<<
509.0005	502.6090	40026.4951	846	0	846	846.000	84260	ALL_R2	viral	Lymphocryptovirus	0.0
<<
0.5987	0.5941	77.5134	1	0	1	1.000	99	R1U	viral	Lymphocryptovirus	n/a	
<<
0.6017	0.5941	47.3126	1	0	1	1.000	100	R2U	viral	Lymphocryptovirus	n/a